RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 NT5EP21589 574 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 MYL9P24844 172 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 TBC1D14Q9P2M4 693 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 SEC14L3Q9UDX4 400 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 PSIP1O75475 530 aaKnown RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 STK16O75716 305 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 IDSP22304 550 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 MADCAM1Q13477 382 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 ATXN7L2Q5T6C5 722 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 GLYATQ6IB77 296 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 SLC26A9Q7LBE3 791 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 KAT2AQ92830 837 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 SNX27Q96L92 541 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 CYP2S1Q96SQ9 504 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 SLC35C2Q9NQQ7 365 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 PCDHB1Q9Y5F3 818 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 AP2A1O95782 977 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 MTHFRP42898 656 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 CTSKP43235 329 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 OMPP47874 163 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 HNMTP50135 292 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 SMARCB1Q12824 385 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 VARS2Q5ST30 1063 aaKnown RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 KRT74Q7RTS7 529 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 CADM2Q8N3J6 435 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 BEND7Q8N7W2 519 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 SLC43A3Q8NBI5 491 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 DNASE1L2Q92874 299 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 PRRG4Q9BZD6 226 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 ZNF222Q9UK12 451 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 RPTORQ8N122 1335 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 CDH5P33151 784 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 CYP4F8P98187 520 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 SIM2Q14190 667 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 IL23RQ5VWK5 629 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 KLK6Q92876 244 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 APOBEC3GQ9HC16 384 aaKnown RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 FAM92AA1XBS5 289 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 GLTPD2A6NH11 291 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 ACRP10323 421 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 ZBTB6Q15916 424 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 FAM192AQ9GZU8 254 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 DHX33Q9H6R0 707 aaKnown RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 PDP1Q9P0J1 537 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-209ENST00000438120 SALL4Q9UJQ4 1053 aa17.07■□□□□ 0.32
PTPRF-209ENST00000438120 DUSP11O75319 330 aaKnown RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 MATN4O95460 622 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CCNCP24863 283 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 YAP1P46937 504 aaKnown RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 SH3PXD2AQ5TCZ1 1133 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 NEK7Q8TDX7 302 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 STYXQ8WUJ0 223 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CIB1Q99828 191 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 FAM83DQ9H4H8 585 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 SEMA3GQ9NS98 782 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 FBXW2Q9UKT8 454 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 RBM7Q9Y580 266 aaKnown RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 YTHDF3Q7Z739 585 aaKnown RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 ANKRD46Q86W74 232 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 FAM47BQ8NA70 645 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CLEC4DQ8WXI8 215 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 MAGEL2Q9UJ55 1249 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CCNDBP1O95273 360 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 PBX3P40426 434 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 KIR3DL1P43629 444 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 DCTN2Q13561 401 aaKnown RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 SPATA19Q7Z5L4 167 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 TAF8Q7Z7C8 310 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CDADC1Q9BWV3 514 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 PNPLA3Q9NST1 481 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 EXD2Q9NVH0 621 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 ATRNO75882 1429 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 FAM149AA5PLN7 773 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 H3BNH8 94 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CLDN9O95484 217 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 C22orf31O95567 290 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 NFATC1O95644 943 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 SAGP10523 405 aaPredicted RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CDH24Q86UP0 819 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 GALNT13Q8IUC8 556 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 ZCCHC10Q8TBK6 192 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 OSBPL11Q9BXB4 747 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 TCAF1Q9Y4C2 921 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 TCEA3O75764 348 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 ECDO95905 644 aaPredicted RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 STAT5AP42229 794 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 ZNF730Q6ZMV8 503 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CXXC5Q7LFL8 322 aaKnown RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 CHST15Q7LFX5 561 aaPredicted RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 SERPINA9Q86WD7 417 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 HEXDCQ8WVB3 486 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 ART5Q96L15 291 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 ACBD6Q9BR61 282 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 FKBPLQ9UIM3 349 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 PRPF19Q9UMS4 504 aaKnown RBP17.06■□□□□ 0.32
PTPRF-209ENST00000438120 EFR3BQ9Y2G0 817 aa17.06■□□□□ 0.32
PTPRF-209ENST00000438120 TEX28O15482 410 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 INSIG1O15503 277 aa17.05■□□□□ 0.32
PTPRF-209ENST00000438120 FGF19O95750 216 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms