RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CLPBQ9H078 707 aa20.93■□□□□ 0.94
PTPRF-207ENST00000436724 WWP1Q9H0M0 922 aa20.93■□□□□ 0.94
PTPRF-207ENST00000436724 ZNF576Q9H609 170 aa20.93■□□□□ 0.94
PTPRF-207ENST00000436724 TSR3Q9UJK0 312 aaKnown RBP20.93■□□□□ 0.94
PTPRF-207ENST00000436724 A0A1W2PQ67 120 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 C16orf96A6NNT2 1141 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 UPK3BL1B0FP48 263 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 UPK3BL2E5RIL1 263 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 CDC7O00311 574 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 KPNA3O00505 521 aaPredicted RBP20.92■□□□□ 0.94
PTPRF-207ENST00000436724 TSPAN12O95859 305 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 HNRNPLP14866 589 aaKnown RBP eCLIP20.92■□□□□ 0.94
PTPRF-207ENST00000436724 ZNF7P17097 686 aaPredicted RBP20.92■□□□□ 0.94
PTPRF-207ENST00000436724 PSMC3P17980 439 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 CLCN7P51798 805 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 CTC1Q2NKJ3 1217 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 HSD11B1LQ7Z5J1 315 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 RBFAQ8N0V3 343 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 NXPE1Q8N323 547 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 CPA6Q8N4T0 437 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 LKAAEAR1Q8TD35 194 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 ILKAPQ9H0C8 392 aaPredicted RBP20.92■□□□□ 0.94
PTPRF-207ENST00000436724 CDH19Q9H159 772 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 CLDND1Q9NY35 253 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 ARMCX1Q9P291 453 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 ZDHHC2Q9UIJ5 367 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 UBXN8O00124 270 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 GDI1P31150 447 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 DNAJB13P59910 316 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 TSNQ15631 228 aaKnown RBP20.92■□□□□ 0.94
PTPRF-207ENST00000436724 CFAP157Q5JU67 520 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 PTRHD1Q6GMV3 140 aaKnown RBP20.92■□□□□ 0.94
PTPRF-207ENST00000436724 MAPK15Q8TD08 544 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 SCAMP4Q969E2 229 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 ATOH8Q96SQ7 321 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 DERL2Q9GZP9 239 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 ITM2BQ9Y287 266 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 KIAA1549LQ6ZVL6 1849 aa20.92■□□□□ 0.94
PTPRF-207ENST00000436724 MUC22E2RYF6 1773 aaPredicted RBP20.91■□□□□ 0.94
PTPRF-207ENST00000436724 AGAP14A8MT82 685 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 FCHO1O14526 889 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 MTHFD2P13995 350 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 HNRNPA1L2Q32P51 320 aaKnown RBP20.91■□□□□ 0.94
PTPRF-207ENST00000436724 C9orf64Q5T6V5 341 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 PARS2Q7L3T8 475 aaKnown RBP20.91■□□□□ 0.94
PTPRF-207ENST00000436724 LINGO1Q96FE5 620 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 TACO1Q9BSH4 297 aaKnown RBP20.91■□□□□ 0.94
PTPRF-207ENST00000436724 OSBPL1AQ9BXW6 950 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 COG4Q9H9E3 785 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 RAP2CQ9Y3L5 183 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 ANKRD12Q6UB98 2062 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 PIKFYVEQ9Y2I7 2098 aa20.91■□□□□ 0.94
PTPRF-207ENST00000436724 TSPAN11A1L157 253 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 NPEPPSL1A6NEC2 478 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 VIPR1P32241 457 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 IDH3AP50213 366 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 TUBB3Q13509 450 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 GRIN2CQ14957 1233 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 GPR33Q49SQ1 333 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 FAM219BQ5XKK7 198 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 SERPINA13PQ6UXR4 307 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 Q6ZVL8 140 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 PIWIL4Q7Z3Z4 852 aaKnown RBP20.9■□□□□ 0.94
PTPRF-207ENST00000436724 PPP1R36Q96LQ0 422 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 ACOX2Q99424 681 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 TBC1D10AQ9BXI6 508 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 TFB2MQ9H5Q4 396 aaKnown RBP20.9■□□□□ 0.94
PTPRF-207ENST00000436724 HCN2Q9UL51 889 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 PCDHB1Q9Y5F3 818 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 PLXNB3Q9ULL4 1909 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 TMEM233B4DJY2 109 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 BTN3A1O00481 513 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 WFS1O76024 890 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 ALOX15P16050 662 aaPredicted RBP20.9■□□□□ 0.94
PTPRF-207ENST00000436724 XPAP23025 273 aaPredicted RBP20.9■□□□□ 0.94
PTPRF-207ENST00000436724 PPARGP37231 505 aaPredicted RBP20.9■□□□□ 0.94
PTPRF-207ENST00000436724 ETV3P41162 512 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 ASPHQ12797 758 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 EIF4HQ15056 248 aaKnown RBP20.9■□□□□ 0.94
PTPRF-207ENST00000436724 FBXO48Q5FWF7 155 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 NKAPQ8N5F7 415 aaKnown RBP20.9■□□□□ 0.94
PTPRF-207ENST00000436724 RHEBL1Q8TAI7 183 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 KIAA1191Q96A73 305 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 CCDC126Q96EE4 140 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 LRIG1Q96JA1 1093 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 PLEKHG4BQ96PX9 1271 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 TTC1Q99614 292 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 FBRSL1Q9HCM7 1045 aaKnown RBP20.9■□□□□ 0.94
PTPRF-207ENST00000436724 SAR1AQ9NR31 198 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 TMPRSS11EQ9UL52 423 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 COMMD10Q9Y6G5 202 aa20.9■□□□□ 0.94
PTPRF-207ENST00000436724 LRRC14BA6NHZ5 514 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 PLK4O00444 970 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 DIAPH2O60879 1101 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 SIX3O95343 332 aaPredicted RBP20.89■□□□□ 0.94
PTPRF-207ENST00000436724 TRIM16O95361 564 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 CYP2A6P11509 494 aaPredicted RBP20.89■□□□□ 0.94
PTPRF-207ENST00000436724 TSPAN8P19075 237 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 CD9P21926 228 aa20.89■□□□□ 0.94
PTPRF-207ENST00000436724 BMP8BP34820 402 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms