RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 PLEKHG4BQ96PX9 1271 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 ERVK-6Q9BXR3 956 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 ZFP14Q9HCL3 533 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 RNF112Q9ULX5 631 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 PLA2G4CQ9UP65 541 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 SORCS3Q9UPU3 1222 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 SPINT3P49223 89 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 UNC50Q53HI1 259 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 SH2D4BQ5SQS7 431 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 CLDN19Q8N6F1 224 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 LRIG1Q96JA1 1093 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 RASSF4Q9H2L5 321 aa26.26■■□□□ 1.79
LDB1-202ENST00000425280 NSUN3Q9H649 340 aaKnown RBP26.26■■□□□ 1.79
LDB1-202ENST00000425280 UPK3BL1B0FP48 263 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 TMEM233B4DJY2 109 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 UPK3BL2E5RIL1 263 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 BTN3A1O00481 513 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 ECI2O75521 394 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 KRT16P08779 473 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 CYP2A6P11509 494 aaPredicted RBP26.25■■□□□ 1.79
LDB1-202ENST00000425280 CALB2P22676 271 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 VIPR1P32241 457 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 ZNF805Q5CZA5 627 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 FUBP1Q96AE4 644 aaKnown RBP26.25■■□□□ 1.79
LDB1-202ENST00000425280 EML4Q9HC35 981 aaKnown RBP26.25■■□□□ 1.79
LDB1-202ENST00000425280 PCDH12Q9NPG4 1184 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 GTSE1Q9NYZ3 720 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 COL4A3Q01955 1670 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 PLXNB3Q9ULL4 1909 aa26.25■■□□□ 1.79
LDB1-202ENST00000425280 PTPN4P29074 926 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 GALNT1Q10472 559 aaPredicted RBP26.24■■□□□ 1.79
LDB1-202ENST00000425280 ARHGEF7Q14155 803 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 PFKFB4Q16877 469 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 ATP13A5Q4VNC0 1218 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 ZDHHC20Q5W0Z9 365 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 LKAAEAR1Q8TD35 194 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 OR52B2Q96RD2 323 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 NUF2Q9BZD4 464 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 DKK3Q9UBP4 350 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 MYO9BQ13459 2157 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 PRR5-ARHGAP8B1AHC4 643 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 SUPT3HB4E1H0 165 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 SUPT3HO75486 399 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 SUPT7LO94864 414 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 ESRRAP11474 423 aaPredicted RBP26.24■■□□□ 1.79
LDB1-202ENST00000425280 ZNF30P17039 623 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 ELF3P78545 371 aaPredicted RBP26.24■■□□□ 1.79
LDB1-202ENST00000425280 ARHGAP8P85298 464 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 TBCCQ15814 346 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 TRMOQ9BU70 441 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 WDR55Q9H6Y2 383 aaPredicted RBP26.24■■□□□ 1.79
LDB1-202ENST00000425280 TNFRSF12AQ9NP84 129 aa26.24■■□□□ 1.79
LDB1-202ENST00000425280 DOCK8Q8NF50 2099 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 JUNP05412 331 aaKnown RBP26.23■■□□□ 1.79
LDB1-202ENST00000425280 ENO1P06733 434 aaKnown RBP26.23■■□□□ 1.79
LDB1-202ENST00000425280 GFAPP14136 432 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 FCHO2Q0JRZ9 810 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 POM121L1PQ3SYA9 428 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 NAIF1Q69YI7 327 aaPredicted RBP26.23■■□□□ 1.79
LDB1-202ENST00000425280 MACC1Q6ZN28 852 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 RAB44Q7Z6P3 723 aaPredicted RBP26.23■■□□□ 1.79
LDB1-202ENST00000425280 CUZD1Q86UP6 607 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 SFTPA1Q8IWL2 248 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 PPP1R36Q96LQ0 422 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 PLA2G2FQ9BZM2 168 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 TCF7L2Q9NQB0 619 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 PKD2L2Q9NZM6 624 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 MUC22E2RYF6 1773 aaPredicted RBP26.23■■□□□ 1.79
LDB1-202ENST00000425280 GOLGA8QA0A0J9YX86 632 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 GOLGA8OA6NCC3 632 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 GOLGA8NF8WBI6 632 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 SIX3O95343 332 aaPredicted RBP26.23■■□□□ 1.79
LDB1-202ENST00000425280 ITGB6P18564 788 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 FNDC3BQ53EP0 1204 aaKnown RBP26.23■■□□□ 1.79
LDB1-202ENST00000425280 PHTF2Q8N3S3 785 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 HCAR2Q8TDS4 363 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 STON2Q8WXE9 905 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 UTP4Q969X6 686 aaKnown RBP26.23■■□□□ 1.79
LDB1-202ENST00000425280 MYADMQ96S97 322 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 ZDHHC3Q9NYG2 299 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 CD84Q9UIB8 345 aa26.23■■□□□ 1.79
LDB1-202ENST00000425280 KIAA1549LQ6ZVL6 1849 aa26.22■■□□□ 1.79
LDB1-202ENST00000425280 LRRC14BA6NHZ5 514 aa26.22■■□□□ 1.79
LDB1-202ENST00000425280 C16orf96A6NNT2 1141 aa26.22■■□□□ 1.79
LDB1-202ENST00000425280 SYCE1LA8MT33 242 aa26.22■■□□□ 1.79
LDB1-202ENST00000425280 UBFD1O14562 309 aaKnown RBP26.22■■□□□ 1.79
LDB1-202ENST00000425280 EIF4HQ15056 248 aaKnown RBP26.22■■□□□ 1.79
LDB1-202ENST00000425280 PDCD2Q16342 344 aaPredicted RBP26.22■■□□□ 1.79
LDB1-202ENST00000425280 HSD11B1LQ7Z5J1 315 aa26.22■■□□□ 1.79
LDB1-202ENST00000425280 FBXO39Q8N4B4 442 aa26.22■■□□□ 1.79
LDB1-202ENST00000425280 PDLIM5Q96HC4 596 aaKnown RBP26.22■■□□□ 1.79
LDB1-202ENST00000425280 ABHD8Q96I13 439 aa26.22■■□□□ 1.79
LDB1-202ENST00000425280 CCDC189A1A4V9 331 aa26.21■■□□□ 1.79
LDB1-202ENST00000425280 E9PBE3 544 aa26.21■■□□□ 1.79
LDB1-202ENST00000425280 NEMP1O14524 444 aa26.21■■□□□ 1.79
LDB1-202ENST00000425280 KLHL41O60662 606 aa26.21■■□□□ 1.79
LDB1-202ENST00000425280 SLC25A14O95258 325 aaPredicted RBP26.21■■□□□ 1.79
LDB1-202ENST00000425280 HLA-EP13747 358 aa26.21■■□□□ 1.79
LDB1-202ENST00000425280 AOC1P19801 751 aa26.21■■□□□ 1.79
LDB1-202ENST00000425280 EPHA3P29320 983 aa26.21■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms