RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ARMC6Q6NXE6 501 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 VSTM1Q6UX27 236 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 TRIML1Q8N9V2 468 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 ATAD1Q8NBU5 361 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 ENGASEQ8NFI3 743 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 OR5B17Q8NGF7 314 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 PSMG2Q969U7 264 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 TRIM44Q96DX7 344 aaPredicted RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 DHTKD1Q96HY7 919 aaPredicted RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 CEP295NLQ96MC4 621 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 MYADMQ96S97 322 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 SYT15Q9BQS2 421 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 ZFP14Q9HCL3 533 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 DMAC2Q9NW81 257 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 GTF2A1LQ9UNN4 478 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 C2orf16Q68DN1 1984 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 DENND4AQ7Z401 1863 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 SYCE3A1L190 88 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 LRRIQ3A6PVS8 624 aaPredicted RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 A8MXQ7 604 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 NPIPB8E9PQR5 432 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 CTIFO43310 598 aaKnown RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 N4BP1O75113 896 aaKnown RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 KRT38O76015 456 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 GNA14O95837 355 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 ZFXP17010 805 aaPredicted RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 ENGP17813 658 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 YWHAEP62258 255 aaKnown RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 TPD52L1Q16890 204 aaPredicted RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 CFAP221Q4G0U5 840 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 CCDC40Q4G0X9 1142 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 KRT39Q6A163 491 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 Q6ZNX1 250 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 RFX8Q6ZV50 586 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 ZNF627Q7L945 461 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 PEG10Q86TG7 708 aaKnown RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 CCDC117Q8IWD4 279 aaPredicted RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 SCN4BQ8IWT1 228 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 OR10T2Q8NGX3 314 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 DEPDC1BQ8WUY9 529 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 MRPS31Q92665 395 aaKnown RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 EXOC4Q96A65 974 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 RTP3Q9BQQ7 232 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 HCFC1R1Q9NWW0 138 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 WNT16Q9UBV4 365 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 ARMCX3Q9UH62 379 aaPredicted RBP6.56□□□□□ -1.36
USP40-202ENST00000409945 SIX4Q9UIU6 781 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 SCN1AP35498 2009 aa6.56□□□□□ -1.36
USP40-202ENST00000409945 LOC105369274A0A096LPK9 316 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 LOC102723532A0A0G2JNH3 316 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 PRAMEF2O60811 474 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 ECI2O75521 394 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 MBPP02686 304 aaPredicted RBP6.55□□□□□ -1.36
USP40-202ENST00000409945 HAPLN1P10915 354 aaPredicted RBP6.55□□□□□ -1.36
USP40-202ENST00000409945 CCNE1P24864 410 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 GABRR2P28476 465 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 GKP32189 559 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 PTGS2P35354 604 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 ADRA1BP35368 520 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 AVPR1AP37288 418 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 MPLP40238 635 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 PRCPP42785 496 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 MAGEA11P43364 429 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 CCT5P48643 541 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 MXI1P50539 228 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 SLC8A3P57103 927 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 MYL6P60660 151 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 NTHL1P78549 312 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 HTR4Q13639 388 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 SOWAHAQ2M3V2 549 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 LAIR1Q6GTX8 287 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 SYT13Q7L8C5 426 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 DNAJB7Q7Z6W7 309 aaPredicted RBP6.55□□□□□ -1.36
USP40-202ENST00000409945 NRSN1Q8IZ57 195 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 OR4N4Q8N0Y3 316 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 ING5Q8WYH8 240 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 NPIPB3Q92617 1050 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 SMARCD2Q92925 531 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 ELSPBP1Q96BH3 223 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 TRAPPC9Q96Q05 1148 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 MED10Q9BTT4 135 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 PI4K2AQ9BTU6 479 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 ELOVL4Q9GZR5 314 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 TSPY26PQ9H489 355 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 FAM124BQ9H5Z6 455 aaPredicted RBP6.55□□□□□ -1.36
USP40-202ENST00000409945 GTF3C4Q9UKN8 822 aa6.55□□□□□ -1.36
USP40-202ENST00000409945 GRID2IPA4D2P6 1211 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 ANHXE9PGG2 379 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 PEX1O43933 1283 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 AKAP3O75969 853 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 HEXIM1O94992 359 aaKnown RBP6.54□□□□□ -1.36
USP40-202ENST00000409945 CCDC192P0DO97 292 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 TMEM225BP0DP42 221 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 CEBPBP17676 345 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 KRT4P19013 534 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 ACAT1P24752 427 aaKnown RBP6.54□□□□□ -1.36
USP40-202ENST00000409945 PPP3CCP48454 512 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 CASP4P49662 377 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 TUBP50607 506 aa6.54□□□□□ -1.36
USP40-202ENST00000409945 NXPH1P58417 271 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms