RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 DNAJB2P25686 324 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 FMO3P31513 532 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 TM4SF4P48230 202 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 DIO3P55073 304 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 MTPNP58546 118 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 INAVAQ3KP66 663 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 PKDCCQ504Y2 493 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 SPANXN3Q5MJ09 141 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 UNC93AQ86WB7 457 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 SPPL2BQ8TCT7 592 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 PABPC5Q96DU9 382 aaKnown RBP12.88□□□□□ -0.35
PTPRN-202ENST00000409251 CENPNQ96H22 339 aaPredicted RBP12.88□□□□□ -0.35
PTPRN-202ENST00000409251 ZNF670Q9BS34 389 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 ABCG8Q9H221 673 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 SARS2Q9NP81 518 aaKnown RBP12.88□□□□□ -0.35
PTPRN-202ENST00000409251 MPP6Q9NZW5 540 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 VTI1BQ9UEU0 232 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 ANAPC2Q9UJX6 822 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 KIAA1257Q9ULG3 409 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 UBA6A0AVT1 1052 aaPredicted RBP12.88□□□□□ -0.35
PTPRN-202ENST00000409251 GOLGA8CPA6NN73 597 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 BCAS1O75363 584 aaPredicted RBP12.88□□□□□ -0.35
PTPRN-202ENST00000409251 FTH1P02794 183 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 HSMCR30P0CW71 290 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 CPB1P15086 417 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 SHMT2P34897 504 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 ARHGAP36Q6ZRI8 547 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 FAR2Q96K12 515 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 C3orf30Q96M34 536 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 QKIQ96PU8 341 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTPRN-202ENST00000409251 ALPK1Q96QP1 1244 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 FICDQ9BVA6 458 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 RNF208Q9H0X6 261 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 TBC1D14Q9P2M4 693 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 PMF1-BGLAPU3KQ54 211 aa12.88□□□□□ -0.35
PTPRN-202ENST00000409251 I6L893 689 aaPredicted RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 LRIG2O94898 1065 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 PIRTP0C851 137 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 SLC35E2BP0CK96 405 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 VEGFBP49765 207 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 MCCD1P59942 119 aaPredicted RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 FRG1Q14331 258 aaKnown RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 GRB7Q14451 532 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 ZNF846Q147U1 533 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 UPP1Q16831 310 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 PRR23CQ6ZRP0 262 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 SPATA2LQ8IUW3 424 aaPredicted RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 CRYBG2Q8N1P7 616 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 RPL3LQ92901 407 aaKnown RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 MAGED4Q96JG8 741 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 GBA3Q9H227 469 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 PADI4Q9UM07 663 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 IDH3BO43837 385 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 TBC1D4O60343 1298 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 CCNKO75909 580 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 IFI30P13284 250 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 ERCC2P18074 760 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 MATKP42679 507 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 NEK2P51955 445 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 PHKG1Q16816 387 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 PIM3Q86V86 326 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 CNIH3Q8TBE1 160 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 MYOCQ99972 504 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 THUMPD3Q9BV44 507 aaKnown RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 WDCPQ9H6R7 721 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 HMX1Q9NP08 348 aaPredicted RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 TRPV5Q9NQA5 729 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 ANK1P16157 1881 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 SNAP91O60641 907 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 RAB10P61026 200 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 LIPEQ05469 1076 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 CDK18Q07002 472 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 ZNF789Q5FWF6 425 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 GPR158Q5T848 1215 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 C8orf59Q8N0T1 100 aaPredicted RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 SH3YL1Q96HL8 342 aaPredicted RBP12.87□□□□□ -0.35
PTPRN-202ENST00000409251 CSF3RQ99062 836 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 LIMD1Q9UGP4 676 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 SUN2Q9UH99 717 aa12.87□□□□□ -0.35
PTPRN-202ENST00000409251 LRRC37A2A6NM11 1700 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 A0A1W2PQ45 241 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 A0A1W2PQY0 241 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 OR51F1A6NGY5 319 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 RGS5O15539 181 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 ABCB1P08183 1280 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 FMO4P31512 558 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 PHC1P78364 1004 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 UBE3AQ05086 875 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 SQLEQ14534 574 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 CCNYL2Q5T2Q4 361 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 PSTKQ8IV42 348 aaKnown RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 CENPLQ8N0S6 344 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 PCSK9Q8NBP7 692 aaKnown RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 ZNF555Q8NEP9 628 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 TRUB1Q8WWH5 349 aaKnown RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 NAT9Q9BTE0 207 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 PRDM5Q9NQX1 630 aaPredicted RBP12.86□□□□□ -0.35
PTPRN-202ENST00000409251 CHD7Q9P2D1 2997 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 LRFN2Q9ULH4 789 aa12.86□□□□□ -0.35
PTPRN-202ENST00000409251 A0A0U1RQF3 1178 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms