RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 OR13H1Q8NG92 308 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 HNRNPLLQ8WVV9 542 aaKnown RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 SGSM3Q96HU1 749 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 SIGLEC10Q96LC7 697 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 LENG8Q96PV6 779 aaPredicted RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 SMIM14Q96QK8 99 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 ELF4Q99607 663 aaPredicted RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 APOL2Q9BQE5 337 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 FOXP3Q9BZS1 431 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 CDH19Q9H159 772 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 MRM3Q9HC36 420 aaKnown RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 FAM114A2Q9NRY5 505 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 KCTD5Q9NXV2 234 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 IL17CQ9P0M4 197 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 RAXQ9Y2V3 346 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 SNX24Q9Y343 169 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 ZNF711Q9Y462 761 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 TENM4Q6N022 2769 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 AGAP14A8MT82 685 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 AGRPO00253 132 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 TRIM38O00635 465 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 GAPDHSO14556 408 aaPredicted RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 AURKAO14965 403 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 EIF3HO15372 352 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS53-203ENST00000401468 LDOC1O95751 146 aaPredicted RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 ELFN1P0C7U0 828 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 ZNF883P0CG24 379 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 THEGLP0DJG4 465 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 C6P13671 934 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 CTPS1P17812 591 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 ADRA1DP25100 572 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 TEAD1P28347 426 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 EPHA8P29322 1005 aaPredicted RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 GRK6P43250 576 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 TNNT3P45378 269 aaPredicted RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 LIG3P49916 1009 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 ZNF140P52738 457 aaPredicted RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 PDE1BQ01064 536 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 SLC7A5Q01650 507 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 GUCY2DQ02846 1103 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 CYP4F3Q08477 520 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 POU4F2Q12837 409 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 CALCOCO2Q13137 446 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 CLN3Q13286 438 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 CUL1Q13616 776 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 LAMB3Q13751 1172 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 FRG1Q14331 258 aaKnown RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 FNBP1LQ5T0N5 605 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 CERCAMQ5T4B2 595 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 HENMT1Q5T8I9 393 aaKnown RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 CCNI2Q6ZMN8 369 aaPredicted RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 GCNT7Q6ZNI0 430 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 NLRP9Q7RTR0 991 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 KDELC2Q7Z4H8 507 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 HSD11B1LQ7Z5J1 315 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 TMEM135Q86UB9 458 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 RELL1Q8IUW5 271 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 NRSN1Q8IZ57 195 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 SLC22A18ASQ8N1D0 253 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 SLC25A41Q8N5S1 370 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 TMEM145Q8NBT3 493 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 DENND6BQ8NEG7 585 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 FBXO25Q8TCJ0 367 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 SAP25Q8TEE9 199 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 CENPTQ96BT3 561 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 LRRC39Q96DD0 335 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 ZNF837Q96EG3 531 aaPredicted RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 DTD2Q96FN9 168 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 PLEKHG4BQ96PX9 1271 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 KLF6Q99612 283 aaPredicted RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 WDR83Q9BRX9 315 aaKnown RBP9.14□□□□□ -0.95
VPS53-203ENST00000401468 KIFC1Q9BW19 673 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 ANKZF1Q9H8Y5 726 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 ZFYVE1Q9HBF4 777 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 GPR27Q9NS67 375 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 TREX1Q9NSU2 369 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 BFARQ9NZS9 450 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 ANAPC5Q9UJX4 755 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 COQ6Q9Y2Z9 468 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 TCAF1Q9Y4C2 921 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 TEX264Q9Y6I9 313 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 MGAQ8IWI9 3026 aa9.14□□□□□ -0.95
VPS53-203ENST00000401468 A0A0U1RQS6 177 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 C1orf232A0A0U1RR37 186 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 FAM237BA0A1B0GVD1 139 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 MAGEB16A2A368 324 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 HEATR9A2RTY3 570 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 POM121BA6NF01 834 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 TRABD2BA6NFA1 517 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 IGLON5A6NGN9 336 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 TNFSF14O43557 240 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 MMP20O60882 483 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 AVILO75366 819 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 TM7SF2O76062 418 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 CLDN7O95471 211 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 CRTAMO95727 393 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 PAK4O96013 591 aaPredicted RBP9.13□□□□□ -0.95
VPS53-203ENST00000401468 SOD1P00441 154 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 PIRTP0C851 137 aa9.13□□□□□ -0.95
VPS53-203ENST00000401468 LPOP22079 712 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms