RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 PDSS1Q5T2R2 415 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 RNASEH2BQ5TBB1 312 aaKnown RBP7.15□□□□□ -1.27
UPF2-203ENST00000397053 LRRC38Q5VT99 294 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 PAPD7Q5XG87 772 aaKnown RBP7.15□□□□□ -1.27
UPF2-203ENST00000397053 POLNQ7Z5Q5 900 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 ANKRD23Q86SG2 305 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 APLFQ8IW19 511 aaPredicted RBP7.15□□□□□ -1.27
UPF2-203ENST00000397053 SFRP1Q8N474 314 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 COX18Q8N8Q8 333 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 ANKFN1Q8N957 763 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 OR2L8Q8NGY9 312 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 PPTC7Q8NI37 304 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 TOP1MTQ969P6 601 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 FCRL4Q96PJ5 515 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 CARS2Q9HA77 564 aaKnown RBP7.15□□□□□ -1.27
UPF2-203ENST00000397053 ADAP2Q9NPF8 381 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 CIDEBQ9UHD4 219 aa7.15□□□□□ -1.27
UPF2-203ENST00000397053 POLR3HQ9Y535 204 aaPredicted RBP7.15□□□□□ -1.27
UPF2-203ENST00000397053 SMIM28A0A1B0GU29 152 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 TTC34A8MYJ7 566 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 PSMD11O00231 422 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 B3GALT2O43825 422 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 TM7SF2O76062 418 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 LRIG2O94898 1065 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 ANXA4P09525 319 aaPredicted RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 ALADP13716 330 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 HNRNPLP14866 589 aaKnown RBP eCLIP7.14□□□□□ -1.27
UPF2-203ENST00000397053 ADSSP30520 456 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 TNFSF9P41273 254 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 SCTRP47872 440 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 MECP2P51608 486 aaKnown RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 TLE2Q04725 743 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 PPP3CAQ08209 521 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 LAPTM5Q13571 262 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 CCSAPQ6IQ19 270 aaPredicted RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 ENPP7Q6UWV6 458 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 C1orf216Q8TAB5 229 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 C11orf24Q96F05 449 aaPredicted RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 DNAJC18Q9H819 358 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 GOLGA2P5Q9HBQ8 144 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 SPAG4Q9NPE6 437 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 GLS2Q9UI32 602 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 CLEC4AQ9UMR7 237 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 SAMD4AQ9UPU9 718 aaKnown RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 HEBP2Q9Y5Z4 205 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 AK5Q9Y6K8 562 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 ZNF536O15090 1300 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 IRS2Q9Y4H2 1338 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 RIC1Q4ADV7 1423 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 IDO1P14902 403 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 HOXA10P31260 410 aaPredicted RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 TTKP33981 857 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 ADRA1BP35368 520 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 PLA2G16P53816 162 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 C1QTNF8P60827 252 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.14□□□□□ -1.273e-11■■■□□ 18.3
UPF2-203ENST00000397053 MED27Q6P2C8 311 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 TNS4Q8IZW8 715 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 SPATA6LQ8N4H0 392 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 ZCCHC9Q8N567 271 aaKnown RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 KIAA0895Q8NCT3 520 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 SLC22A18Q96BI1 424 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 MTMR8Q96EF0 704 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 SYT17Q9BSW7 474 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 ZNF490Q9ULM2 529 aaPredicted RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 A0A0J9YVX5 310 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 A6NCN8 305 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 CCDC182A6NF36 153 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 OR7A10O76100 309 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 ZBTB48P10074 688 aaPredicted RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 CD247P20963 164 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 TIE1P35590 1138 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 SLC34A1Q06495 639 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 HEPACAMQ14CZ8 416 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 TMEM220Q6QAJ8 160 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 HSDL2Q6YN16 418 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 RANBP3LQ86VV4 465 aaPredicted RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 GJD3Q8N144 294 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 OR4K17Q8NGC6 315 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 EPS8L1Q8TE68 723 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 ZFRQ96KR1 1074 aaKnown RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 PURBQ96QR8 312 aaKnown RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 GSDMCQ9BYG8 508 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 PNPLA8Q9NP80 782 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 KCNK4Q9NYG8 393 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 CD84Q9UIB8 345 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 CAPN14A8MX76 684 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 TRAFD1O14545 582 aaPredicted RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 TREHO43280 583 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 PEX14O75381 377 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 PRAMEF1O95521 474 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 MTHFD1P11586 935 aaKnown RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 RPL17P18621 184 aaKnown RBP7.14□□□□□ -1.27
UPF2-203ENST00000397053 AP1S1P61966 158 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 GHRHRQ02643 423 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 SLC20A2Q08357 652 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 MAMLD1Q13495 774 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 WDR45BQ5MNZ6 344 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 BROXQ5VW32 411 aa7.14□□□□□ -1.27
UPF2-203ENST00000397053 TTC27Q6P3X3 843 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms