RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SCAMP3O14828 347 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 MTHFD1P11586 935 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 ADCYAP1R1P41586 468 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 GNA13Q14344 377 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 SUZ12Q15022 739 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 GPAT3Q53EU6 434 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 COMMD2Q86X83 199 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 PYROXD2Q8N2H3 581 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 NDRG1Q92597 394 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 C1orf21Q9H246 121 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 SUCOQ9UBS9 1254 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 PSME2Q9UL46 239 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 N6AMT1Q9Y5N5 214 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 TSPAN4O14817 238 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 PTPRAP18433 802 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 MMP14P50281 582 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 PFKPQ01813 784 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF829Q3KNS6 432 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 CPTPQ5TA50 214 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 C12orf43Q96C57 262 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 EXD2Q9NVH0 621 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 NFKBIL1Q9UBC1 381 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 SPEF1Q9Y4P9 236 aa19.4■□□□□ 0.7
CCDC88B-202ENST00000356786 FAM172BPA6NC97 362 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 CXorf49A8MYA2 514 aaPredicted RBP19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 DYRK3O43781 588 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 OR6A2O95222 327 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 URODP06132 367 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 BUD31P41223 144 aaPredicted RBP19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 BCAP31P51572 246 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 OR2B6P58173 313 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 LCN1P1Q5VSP4 162 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF438Q7Z4V0 828 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 PHTF2Q8N3S3 785 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 PTCD2Q8WV60 388 aaKnown RBP19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 KCNS3Q9BQ31 491 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 CCDC3Q9BQI4 270 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 AGO3Q9H9G7 860 aaKnown RBP19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 APOBEC3GQ9HC16 384 aaKnown RBP19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 AMBNQ9NP70 447 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 INTS7Q9NVH2 962 aaKnown RBP19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 KANSL3Q9P2N6 904 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 SLC17A6Q9P2U8 582 aa19.39■□□□□ 0.7
CCDC88B-202ENST00000356786 CHD2O14647 1828 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 SPATA31C2B4DYI2 1134 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 KPNA3O00505 521 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 KLF11O14901 512 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 TRBC1P01850 177 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 ARF4P18085 180 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 TNNI3P19429 210 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 R3HCC1LQ7Z5L2 792 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 GLIS1Q8NBF1 620 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 MINDY2Q8NBR6 621 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 OR4K2Q8NGD2 314 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 SYNDIG1Q9H7V2 258 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 KLHL33A6NCF5 533 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 NEMP2A6NFY4 417 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 PRMT5O14744 637 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 PAGE1O75459 146 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 RAP2AP10114 183 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 ZNF157P51786 506 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 DAG1Q14118 895 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 MFSD10Q14728 455 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 COLEC12Q5KU26 742 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 RASAL3Q86YV0 1011 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 LRRC20Q8TCA0 184 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 PPP1R14AQ96A00 147 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 B3GALT6Q96L58 329 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 GPR21Q99679 349 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 MRIQ9BWK5 157 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 IRAK3Q9Y616 596 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 ADAMTS3O15072 1205 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 SLC22A1O15245 554 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 CTPS1P17812 591 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 RPL26P61254 145 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 ZNF607Q96SK3 696 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 IPPKQ9H8X2 491 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 PHF11Q9UIL8 331 aa19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 OAS3Q9Y6K5 1087 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-202ENST00000356786 C2CD4BA6NLJ0 364 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 hCG_2039718K7EN88 272 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 PCDH8O95206 1070 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 RPLP0P05388 317 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 S100A6P06703 90 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 CD36P16671 472 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 ATF4P18848 351 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 MTPNP58546 118 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 SYT16Q17RD7 645 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 SETMARQ53H47 684 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 ZDHHC21Q8IVQ6 265 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 RBFAQ8N0V3 343 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 POMGNT2Q8NAT1 580 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 ABHD16BQ9H3Z7 469 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 TMPRSS4Q9NRS4 437 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 COQ4Q9Y3A0 265 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 RLN1P04808 185 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 CYP2A6P11509 494 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 CCR4P51679 360 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 GPX6P59796 221 aa19.38■□□□□ 0.69
CCDC88B-202ENST00000356786 HSF2Q03933 536 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms