RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SMAPO00193 183 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 TPP1O14773 563 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 GPR37L1O60883 481 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 PYGBP11216 843 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 ACP5P13686 325 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 KRT4P19013 534 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 PREPP48147 710 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 CTSCP53634 463 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 IRF9Q00978 393 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 CCDC15Q0P6D6 951 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 STAT4Q14765 748 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 AFTPHQ6ULP2 937 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 CILP2Q8IUL8 1156 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 DCLK2Q8N568 766 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 C2orf73Q8N5S3 287 aaPredicted RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 EIF1ADQ8N9N8 165 aaKnown RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 SIDT2Q8NBJ9 832 aaKnown RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 SPDYE1Q8NFV5 336 aaPredicted RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 LRRC39Q96DD0 335 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 SCYL1Q96KG9 808 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 WDR26Q9H7D7 661 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 OAS3Q9Y6K5 1087 aaKnown RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 PIEZO1Q92508 2521 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 FAM95CA0A1B0GW59 222 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 ZNF189O75820 626 aaPredicted RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 RASGRP1O95267 797 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 MT-ND3P03897 115 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 IVLP07476 585 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 ITGA2BP08514 1039 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 ARL1P40616 181 aaPredicted RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 CD151P48509 253 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 CCR3P51677 355 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 ENPP2Q13822 863 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 CSHL1Q14406 222 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 RALGPS1Q5JS13 557 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 ICE2Q659A1 982 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 SLC30A9Q6PML9 568 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 TMEM220Q6QAJ8 160 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 KBTBD6Q86V97 674 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 MDM1Q8TC05 714 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 DTD2Q96FN9 168 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 TXLNGYQ9BZA5 131 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 TRABDQ9H4I3 376 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 PCYT1BQ9Y5K3 369 aaPredicted RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 IGHV1OR15-9A0A0B4J2B8 117 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 AP3B1O00203 1094 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 NPC1O15118 1278 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 EIF3HO15372 352 aaKnown RBP eCLIP9.12□□□□□ -0.953e-7■■■■□ 20.2
USP4-202ENST00000351842 GNPDA1P46926 289 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 TAS2R39P59534 338 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 INSCQ1MX18 579 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 KLHL38Q2WGJ6 581 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 TPRG1LQ5T0D9 272 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 KIAA0930Q6ICG6 404 aaPredicted RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 CEP128Q6ZU80 1094 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 SLC26A11Q86WA9 606 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 KDM1BQ8NB78 822 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 LKAAEAR1Q8TD35 194 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 SPACA7Q96KW9 195 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 GPR21Q99679 349 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 HDAC8Q9BY41 377 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 VPS18Q9P253 973 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 DKK3Q9UBP4 350 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 APPL1Q9UKG1 709 aa9.12□□□□□ -0.95
USP4-202ENST00000351842 ASCC3Q8N3C0 2202 aaKnown RBP9.12□□□□□ -0.95
USP4-202ENST00000351842 GAPDHSO14556 408 aaPredicted RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 TSPAN6O43657 245 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 FOXN2P32314 431 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 GP5P40197 560 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 RPL26P61254 145 aaKnown RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 XIAPP98170 497 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 PDAP1Q13442 181 aaKnown RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 CDKN3Q16667 212 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 OTOAQ7RTW8 1153 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 RBFAQ8N0V3 343 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 IQCKQ8N0W5 287 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 ZNF687Q8N1G0 1237 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 MREGQ8N565 214 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 OR13H1Q8NG92 308 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 JPH3Q8WXH2 748 aaPredicted RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 RNF31Q96EP0 1072 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 FOXP3Q9BZS1 431 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 IQCGQ9H095 443 aaKnown RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 CARS2Q9HA77 564 aaKnown RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 ITM2CQ9NQX7 267 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 DNAJC28Q9NX36 388 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 MOCS1Q9NZB8 636 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 PSMC3IPQ9P2W1 217 aaPredicted RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 TMPRSS11EQ9UL52 423 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 RPL26L1Q9UNX3 145 aaKnown RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 ZNF318Q5VUA4 2279 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 SEC16AO15027 2179 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 PDZK1P1A8MUH7 402 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 PATE3B3GLJ2 98 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 PLRG1O43660 514 aaKnown RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 GM2AP17900 193 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 AK4P27144 223 aaPredicted RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 CDKN2DP55273 166 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 CACNG1Q06432 222 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms