RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ABCG8Q9H221 673 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 ZNF576Q9H609 170 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 DKK3Q9UBP4 350 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 IKZF3Q9UKT9 509 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 SARDHQ9UL12 918 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 AGAP14A8MT82 685 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 H0YHG0 523 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 CDC7O00311 574 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 KERAO60938 352 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 DNAJC8O75937 253 aaPredicted RBP13.26□□□□□ -0.29
HMGB1-202ENST00000339872 UNC5CO95185 931 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 CBX6O95503 412 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 TSPAN12O95859 305 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 PRNPP04156 253 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 TPBGLP0DKB5 382 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 HNRNPLP14866 589 aaKnown RBP eCLIP13.26□□□□□ -0.29
HMGB1-202ENST00000339872 IDH3AP50213 366 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 RPL14P50914 215 aaKnown RBP13.26□□□□□ -0.29
HMGB1-202ENST00000339872 NFKB2Q00653 900 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 CTC1Q2NKJ3 1217 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 SPDYAQ5MJ70 313 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 HSD11B1LQ7Z5J1 315 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 C10orf67Q8IYJ2 551 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 MICALL1Q8N3F8 863 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 KDM1BQ8NB78 822 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 STAG3L4Q8TBR4 150 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 UCMAQ8WVF2 138 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 OR8D1Q8WZ84 308 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 CNDP1Q96KN2 507 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 SPATA16Q9BXB7 569 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 COG4Q9H9E3 785 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 ZDHHC4Q9NPG8 344 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 ARMCX1Q9P291 453 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 ZDHHC2Q9UIJ5 367 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 TSR3Q9UJK0 312 aaKnown RBP13.26□□□□□ -0.29
HMGB1-202ENST00000339872 PIKFYVEQ9Y2I7 2098 aa13.26□□□□□ -0.29
HMGB1-202ENST00000339872 SUPT3HB4E1H0 165 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 SUPT3HO75486 399 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 GFAPP14136 432 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 IMPDH1P20839 514 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 SERPINB5P36952 375 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 METAP1P53582 386 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ALDH18A1P54886 795 aaKnown RBP13.25□□□□□ -0.29
HMGB1-202ENST00000339872 C9orf64Q5T6V5 341 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 DPPA4Q7L190 304 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 PTGR2Q8N8N7 351 aaPredicted RBP13.25□□□□□ -0.29
HMGB1-202ENST00000339872 LKAAEAR1Q8TD35 194 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 HCAR2Q8TDS4 363 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 RPP25Q9BUL9 199 aaKnown RBP13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ZDHHC3Q9NYG2 299 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 HAO1Q9UJM8 370 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 APOBEC2Q9Y235 224 aaKnown RBP13.25□□□□□ -0.29
HMGB1-202ENST00000339872 DHRS7Q9Y394 339 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 CCDC22O60826 627 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 KAT7O95251 611 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 TRIM16O95361 564 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 MTHFD2P13995 350 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 MMP12P39900 470 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ETV3P41162 512 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 NSG1P42857 185 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 RALGDSQ12967 914 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 TUBB3Q13509 450 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ELAVL3Q14576 367 aaKnown RBP13.25□□□□□ -0.29
HMGB1-202ENST00000339872 PFKFB4Q16877 469 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ZNF678Q5SXM1 525 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 SEL1L3Q68CR1 1132 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ERAP2Q6P179 960 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 FRMD7Q6ZUT3 714 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 RAB44Q7Z6P3 723 aaPredicted RBP13.25□□□□□ -0.29
HMGB1-202ENST00000339872 PIP4K2CQ8TBX8 421 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 MAPK15Q8TD08 544 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ULK4Q96C45 1275 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ERLEC1Q96DZ1 483 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 L3HYPDHQ96EM0 354 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 CHFRQ96EP1 664 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 COPS8Q99627 209 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 TMEM245Q9H330 911 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 TRIM33Q9UPN9 1127 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ITM2BQ9Y287 266 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 XIRP2A4UGR9 3374 aa13.25□□□□□ -0.29
HMGB1-202ENST00000339872 ANTXRLA6NF34 631 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 MATN2O00339 956 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 ECI2O75521 394 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SUPT7LO94864 414 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SLC25A14O95258 325 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-202ENST00000339872 HERVK_113P63132 956 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 GRIN2CQ14957 1233 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SH2D4BQ5SQS7 431 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 MACC1Q6ZN28 852 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 Q6ZVL8 140 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SCAMP4Q969E2 229 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 FUBP1Q96AE4 644 aaKnown RBP13.24□□□□□ -0.29
HMGB1-202ENST00000339872 KLHL29Q96CT2 875 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 PPP1R36Q96LQ0 422 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 TRMT61BQ9BVS5 477 aaKnown RBP13.24□□□□□ -0.29
HMGB1-202ENST00000339872 ERVK-6Q9BXR3 956 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 FAM83DQ9H4H8 585 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 GSTO2Q9H4Y5 243 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 SAR1AQ9NR31 198 aa13.24□□□□□ -0.29
HMGB1-202ENST00000339872 TICRRQ7Z2Z1 1910 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms