RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 FLT3LGP49771 235 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 SWI5Q1ZZU3 235 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 GALNT18Q6P9A2 607 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 KLHL35Q6PF15 583 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 ZBTB2Q8N680 514 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 CLP1Q92989 425 aaKnown RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 P2RY11Q96G91 374 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 KLHL32Q96NJ5 620 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 C11orf16Q9NQ32 467 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 PHPT1Q9NRX4 125 aaPredicted RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 DEC1Q9P2X7 70 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 ZFP37Q9Y6Q3 630 aaPredicted RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 ABCA6Q8N139 1617 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 MATKP42679 507 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 ZNF135P52742 658 aaPredicted RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 ERVK-21P61565 698 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 MXD1Q05195 221 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 C6orf183Q5T699 404 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 SLC8B1Q6J4K2 584 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 GALNT13Q8IUC8 556 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 CCDC54Q8NEL0 328 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 ZNF446Q9NWS9 450 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.55□□□□□ -0.47e-9■□□□□ 10.4
SDC3-201ENST00000336798 SPEF1Q9Y4P9 236 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 RAI2Q9Y5P3 530 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.55□□□□□ -0.4
SDC3-201ENST00000336798 RPTORQ8N122 1335 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 FAM86C2PA6NEL3 165 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 LRRC72A6NJI9 287 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 HSF2Q03933 536 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 HECTD2Q5U5R9 776 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 MSANTD2Q6P1R3 559 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 KCTD8Q6ZWB6 473 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 PEX5LQ8IYB4 626 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 PIK3C3Q8NEB9 887 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 TRAF6Q9Y4K3 522 aa12.55□□□□□ -0.4
SDC3-201ENST00000336798 TARBP1Q13395 1621 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 A0A0X1KG70 313 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 S100A6P06703 90 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 IDO1P14902 403 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 IL12BP29460 328 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 GLUD2P49448 558 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 ARF3P61204 181 aaPredicted RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 ARF1P84077 181 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 SP140Q13342 867 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 C5orf22Q49AR2 442 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 RGMBQ6NW40 437 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 ANKRD46Q86W74 232 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 ZNF280BQ86YH2 543 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 NAXEQ8NCW5 288 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 OR2L3Q8NG85 312 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 SNX33Q8WV41 574 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 AP3S1Q92572 193 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 C11orf24Q96F05 449 aaPredicted RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 TMEM27Q9HBJ8 222 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 MAPRE3Q9UPY8 281 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 FAM172BPA6NC97 362 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 SLC15A5A6NIM6 579 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 SAP18O00422 153 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 LRIG2O94898 1065 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 ITGAVP06756 1048 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 TUBA3EQ6PEY2 450 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 GALNT7Q86SF2 657 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 VSIG10LQ86VR7 867 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 MCCC2Q9HCC0 563 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 NR2F6P10588 404 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 ILF2Q12905 390 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 PEX6Q13608 980 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 ITGA7Q13683 1181 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 RPL10LQ96L21 214 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 DUS2Q9NX74 493 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 CACNG4Q9UBN1 327 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 GGA2Q9UJY4 613 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 PDX1P52945 283 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 CCDC115Q96NT0 180 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 TEFMQ96QE5 360 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 TDRD1Q9BXT4 1180 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 EIF2S3P41091 472 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 HSPA7P48741 367 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 CCR3P51677 355 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 DSC2Q02487 901 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 UBXN2BQ14CS0 331 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 SLCO6A1Q86UG4 719 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 AKAP14Q86UN6 197 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 HID1Q8IV36 788 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 AADATQ8N5Z0 425 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 OR2T12Q8NG77 320 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 GTPBP3Q969Y2 492 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 ZNF670Q9BS34 389 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 C12orf65Q9H3J6 166 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 ERVK-11Q9UQG0 969 aa12.54□□□□□ -0.4
SDC3-201ENST00000336798 RNF17Q9BXT8 1623 aaKnown RBP12.54□□□□□ -0.4
SDC3-201ENST00000336798 TCRBV9S1A1TA0A576 114 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 PLIN3O60664 434 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 OR7A10O76100 309 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 IDSP22304 550 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 CDK9P50750 372 aaKnown RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 ALDH3A2P51648 485 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 TUBA4AP68366 448 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 RNF220Q5VTB9 566 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms