RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 HMGCLP35914 325 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 CORO7P57737 925 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 ARL13AQ5H913 290 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 LAYNQ6UX15 382 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 Q6ZVL8 140 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 VPS37AQ8NEZ2 397 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 VN1R2Q8NFZ6 395 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 NCLNQ969V3 563 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 ISG20Q96AZ6 181 aaKnown RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 ZNF514Q96K75 400 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 MYLK2Q9H1R3 596 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 ZNF576Q9H609 170 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 NOL6Q9H6R4 1146 aaKnown RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 NUDT4Q9NZJ9 180 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 RIMKLBQ9ULI2 386 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 CAPN8A6NHC0 703 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 LILRB3O75022 631 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 CYP17A1P05093 508 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 PCCBP05166 539 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 PCNAP12004 261 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 SLC2A4P14672 509 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 SLC26A3P40879 764 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 LEPRP48357 1165 aaKnown RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 SGSHP51688 502 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 RAP1GDS1P52306 607 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 PLOD1Q02809 727 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 FAM78AQ5JUQ0 283 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 TMEM220Q6QAJ8 160 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 IL27RAQ6UWB1 636 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 CUZD1Q86UP6 607 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 SPATA24Q86W54 205 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 TERB1Q8NA31 727 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 FNDC5Q8NAU1 212 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 SDCCAG3Q96C92 435 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 CCDC134Q9H6E4 229 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 TYROBPO43914 113 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 KRT16P08779 473 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 CTSEP14091 401 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 LBPP18428 481 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 MPSTP25325 297 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 RGRP47804 291 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 MAD2L1Q13257 205 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 SZRD1Q7Z422 152 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 TDHQ8IZJ6 230 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 TCAIMQ8N3R3 496 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 BEND7Q8N7W2 519 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-201ENST00000254950 CDYL2Q8N8U2 506 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 ZDHHC4Q9NPG8 344 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 AASDHPPTQ9NRN7 309 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 TRAF6Q9Y4K3 522 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 TRIP11Q15643 1979 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 LOC285095A0A1B0GVY8 99 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 TMEM247A6NEH6 219 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 PTPN4P29074 926 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 CCR3P51677 355 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 NME5P56597 212 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 KCTD11Q693B1 232 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 CXorf57Q6NSI4 855 aaKnown RBP11.48□□□□□ -0.57
VPS4A-201ENST00000254950 NPAS3Q8IXF0 933 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 NXPE1Q8N323 547 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 CLDN19Q8N6F1 224 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 PBX4Q9BYU1 374 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 PCDH12Q9NPG4 1184 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 SPASTQ9UBP0 616 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 CD207Q9UJ71 328 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 I6L893 689 aaPredicted RBP11.48□□□□□ -0.57
VPS4A-201ENST00000254950 UBXN8O00124 270 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 SLC31A1O15431 190 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 RGS14O43566 566 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 PBX2P40425 430 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 CYP2A13Q16696 494 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 RGL4Q8IZJ4 473 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 CHST14Q8NCH0 376 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 SELENOMQ8WWX9 145 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 PARVBQ9HBI1 364 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 FBXL12Q9NXK8 326 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 PRKAG3Q9UGI9 489 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 SPO11Q9Y5K1 396 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 KCNE2Q9Y6J6 123 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 GOLGA4Q13439 2230 aaKnown RBP11.48□□□□□ -0.57
VPS4A-201ENST00000254950 ALDOAP04075 364 aaKnown RBP11.48□□□□□ -0.57
VPS4A-201ENST00000254950 CTSOP43234 321 aaPredicted RBP11.48□□□□□ -0.57
VPS4A-201ENST00000254950 RPIAP49247 311 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 PAGE2BQ5JRK9 111 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 EOGTQ5NDL2 527 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 ZNF534Q76KX8 674 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 ERN2Q76MJ5 926 aaKnown RBP11.48□□□□□ -0.57
VPS4A-201ENST00000254950 SLC26A7Q8TE54 656 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 REPS1Q96D71 796 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 SCRN2Q96FV2 425 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 MARCH4Q9P2E8 410 aaPredicted RBP11.48□□□□□ -0.57
VPS4A-201ENST00000254950 STOML1Q9UBI4 398 aa11.48□□□□□ -0.57
VPS4A-201ENST00000254950 H3BQ06 376 aaPredicted RBP11.47□□□□□ -0.57
VPS4A-201ENST00000254950 NR5A2O00482 541 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 STK16O75716 305 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 WDR47O94967 919 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 NFATC2Q13469 925 aa11.47□□□□□ -0.57
VPS4A-201ENST00000254950 FASTKQ14296 549 aaKnown RBP11.47□□□□□ -0.57
VPS4A-201ENST00000254950 CAPRIN1Q14444 709 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms