RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PIKFYVEQ9Y2I7 2098 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 C1orf232A0A0U1RR37 186 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 TYW5A2RUC4 315 aaKnown RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 E7ENX8 843 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 H3BNX3 289 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 FKBP6O75344 327 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 SOX11P35716 441 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 SLC26A3P40879 764 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 YBX1P67809 324 aaKnown RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 CLCQ05315 142 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 CDC16Q13042 620 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 LRRC26Q2I0M4 334 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 LARP4Q71RC2 724 aaKnown RBP eCLIP10.55□□□□□ -0.723e-6■■□□□ 13.7
CUX1-221ENST00000622516 RAB44Q7Z6P3 723 aaPredicted RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 CLYBLQ8N0X4 340 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 HJURPQ8NCD3 748 aaPredicted RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 KIAA1191Q96A73 305 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 TUBGCP3Q96CW5 907 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 MRPL1Q9BYD6 325 aaKnown RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 SYTL2Q9HCH5 934 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 STK39Q9UEW8 545 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 TRMT6Q9UJA5 497 aaKnown RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 VCANP13611 3396 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 LCHNA4D1U4 455 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 AZIN1O14977 448 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 CCL16O15467 120 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 DNAJA2O60884 412 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 VPS26AO75436 327 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 FGF18O76093 207 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 TSPAN12O95859 305 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 CLTBP09497 229 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 XIAPP98170 497 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 LMAN2Q12907 356 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 SFT2D3Q587I9 215 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 TSPAN33Q86UF1 283 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 KBTBD6Q86V97 674 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 ZSWIM9Q86XI8 627 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 AFAP1L2Q8N4X5 818 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 CD200R1Q8TD46 325 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 GDPD5Q8WTR4 605 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 EBF3Q9H4W6 596 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 TFB2MQ9H5Q4 396 aaKnown RBP10.54□□□□□ -0.72
CUX1-221ENST00000622516 IL17CQ9P0M4 197 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 PKP3Q9Y446 797 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 ZNF711Q9Y462 761 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 KERAO60938 352 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 CRCPO75575 148 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 GUCA1CO95843 209 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 ZCCHC18P0CG32 403 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 TTPAP49638 278 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 PTK2BQ14289 1009 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 VPS26BQ4G0F5 336 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 HABP4Q5JVS0 413 aaKnown RBP10.54□□□□□ -0.72
CUX1-221ENST00000622516 DGKKQ5KSL6 1271 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 ARMC12Q5T9G4 340 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 TMEM154Q6P9G4 183 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 CHSY3Q70JA7 882 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 DDX53Q86TM3 631 aaKnown RBP10.54□□□□□ -0.72
CUX1-221ENST00000622516 FUNDC1Q8IVP5 155 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 PGAM4Q8N0Y7 254 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 PIH1D2Q8WWB5 315 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 TOX2Q96NM4 488 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 ECSITQ9BQ95 431 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 C17orf80Q9BSJ5 609 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 SEZ6LQ9BYH1 1024 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 DERL2Q9GZP9 239 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 RC3H2Q9HBD1 1191 aaKnown RBP10.54□□□□□ -0.72
CUX1-221ENST00000622516 CACNA2D2Q9NY47 1150 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 ETAA1Q9NY74 926 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 EIF2B4Q9UI10 523 aaKnown RBP10.54□□□□□ -0.72
CUX1-221ENST00000622516 ZNF225Q9UK10 706 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 INTS6Q9UL03 887 aaKnown RBP10.54□□□□□ -0.72
CUX1-221ENST00000622516 COMMD10Q9Y6G5 202 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 TANC1Q9C0D5 1861 aa10.54□□□□□ -0.72
CUX1-221ENST00000622516 NR5A2O00482 541 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 TRIM16O95361 564 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 PRAMEF1O95521 474 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 CCR2P41597 374 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 DIO3P55073 304 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 AQP4P55087 323 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 PSME3P61289 254 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 CREB5Q02930 508 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 BLMHQ13867 455 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 GRAMD1BQ3KR37 738 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 REP15Q6BDI9 236 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 CYP2R1Q6VVX0 501 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 Q6ZNB5 142 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 ST13P5Q8NFI4 369 aaPredicted RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 RHEBL1Q8TAI7 183 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 RIN3Q8TB24 985 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 NUDT8Q8WV74 236 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 MRPS31Q92665 395 aaKnown RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 MYO19Q96H55 970 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 HERC2P3Q9BVR0 1158 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SLC46A2Q9BY10 475 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 CIPCQ9C0C6 399 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 COPS7BQ9H9Q2 264 aaPredicted RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 CD274Q9NZQ7 290 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 STOML2Q9UJZ1 356 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 PCDHGA7Q9Y5G6 932 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms