RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PRMT5O14744 637 aaPredicted RBP14.15□□□□□ -0.14
USP39-220ENST00000613444 PFDN6O15212 129 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 RNASEH1O60930 286 aaKnown RBP14.15□□□□□ -0.14
USP39-220ENST00000613444 PKMP14618 531 aaKnown RBP14.15□□□□□ -0.14
USP39-220ENST00000613444 CD9P21926 228 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 RPS3P23396 243 aaKnown RBP eCLIP14.15□□□□□ -0.143e-13■■■■□ 26.3
USP39-220ENST00000613444 SERPINB4P48594 390 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 SLC12A2P55011 1212 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 ZP2Q05996 745 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 MLF2Q15773 248 aaPredicted RBP14.15□□□□□ -0.14
USP39-220ENST00000613444 PDK4Q16654 411 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 FBXO43Q4G163 708 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 LYPLAL1Q5VWZ2 237 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 ZNF776Q68DI1 518 aaPredicted RBP14.15□□□□□ -0.14
USP39-220ENST00000613444 SDE2Q6IQ49 451 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 CYP2U1Q7Z449 544 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 LCA5Q86VQ0 697 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 ADHFE1Q8IWW8 467 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 NRSN1Q8IZ57 195 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 DYDC1Q8WWB3 177 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 DTD2Q96FN9 168 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 TSPAN17Q96FV3 270 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 MAGEB18Q96M61 343 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 SLC6A17Q9H1V8 727 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 ABCG8Q9H221 673 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 FBRSQ9HAH7 460 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 POPDC3Q9HBV1 291 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 IGSF5Q9NSI5 407 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 GALPQ9UBC7 116 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 CRLS1Q9UJA2 301 aa14.15□□□□□ -0.14
USP39-220ENST00000613444 A0A087X1B8 175 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 FADS2P1A8MWK0 482 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 AP1G1O43747 822 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 KLHL2O95198 593 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 ESR1P03372 595 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 SBK3P0C264 359 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 C6P13671 934 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 TAC1P20366 129 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 B4GALNT1Q00973 533 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 ITGA9Q13797 1035 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 STARD3Q14849 445 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 RGS9BPQ6ZS82 235 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 RBFAQ8N0V3 343 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 SPATA6LQ8N4H0 392 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 TRAM1L1Q8N609 369 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 RPLP0P6Q8NHW5 317 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 NAT14Q8WUY8 206 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 NXNL1Q96CM4 212 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 RIOK2Q9BVS4 552 aaKnown RBP14.15□□□□□ -0.15
USP39-220ENST00000613444 EPN3Q9H201 632 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 GPAMQ9HCL2 828 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 RAD18Q9NS91 495 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 COQ6Q9Y2Z9 468 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 OAS3Q9Y6K5 1087 aaKnown RBP14.15□□□□□ -0.15
USP39-220ENST00000613444 PRSS21Q9Y6M0 314 aa14.15□□□□□ -0.15
USP39-220ENST00000613444 A0A1W2PP55 124 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 WNT9AO14904 365 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 MMP20O60882 483 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 NIPSNAP2O75323 286 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 ZNF7P17097 686 aaPredicted RBP14.14□□□□□ -0.15
USP39-220ENST00000613444 ITIH4Q14624 930 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 ACOX1Q15067 660 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 SEPT7Q16181 437 aaKnown RBP14.14□□□□□ -0.15
USP39-220ENST00000613444 TMEM92Q6UXU6 159 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 TAX1BP1Q86VP1 789 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 TMPRSS6Q8IU80 811 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 PELI3Q8N2H9 469 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 HDDC3Q8N4P3 179 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 SLC30A3Q99726 388 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 MECRQ9BV79 373 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 SPATA16Q9BXB7 569 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 ZDHHC3Q9NYG2 299 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.14□□□□□ -0.15
USP39-220ENST00000613444 PCDHB1Q9Y5F3 818 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 COMMD10Q9Y6G5 202 aa14.14□□□□□ -0.15
USP39-220ENST00000613444 GMNCA6NCL1 334 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 TARM1B6A8C7 271 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 RECQL5O94762 991 aaPredicted RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 SOD1P00441 154 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 ZNF37AP17032 561 aaPredicted RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 PPARGP37231 505 aaPredicted RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 SLC26A3P40879 764 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 CCDC153Q494R4 210 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 HSF5Q4G112 596 aaPredicted RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 CCDC91Q7Z6B0 441 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 CLDN19Q8N6F1 224 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 GIMAP7Q8NHV1 300 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 MAFAQ8NHW3 353 aaPredicted RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 HEXDCQ8WVB3 486 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 KCNJ9Q92806 393 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 FAM136AQ96C01 138 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 ULK4Q96C45 1275 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 ZSCAN5AQ9BUG6 496 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 NMRAL1Q9HBL8 299 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 TAS2R13Q9NYV9 303 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 SIRPGQ9P1W8 387 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 RUVBL2Q9Y230 463 aaKnown RBP14.13□□□□□ -0.15
USP39-220ENST00000613444 WDR91A4D1P6 747 aa14.13□□□□□ -0.15
USP39-220ENST00000613444 IQCF5A8MTL0 148 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms