RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 PRELID2Q8N945 189 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 NLGN4YQ8NFZ3 816 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 SLC35B2Q8TB61 432 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 ACTL9Q8TC94 416 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 TCTN2Q96GX1 697 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 HEPHQ9BQS7 1158 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 WRAP53Q9BUR4 548 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 DDA1Q9BW61 102 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 FRMD8P1Q9BZ68 369 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 SLC39A8Q9C0K1 460 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 ZMYND15Q9H091 742 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 MAP10Q9P2G4 905 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 SAE1Q9UBE0 346 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 DKK3Q9UBP4 350 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 KLQ9UEF7 1012 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 R3HDM2Q9Y2K5 976 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 MRPS18BQ9Y676 258 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 KCNMB2Q9Y691 235 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 C16orf96A6NNT2 1141 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 CLCN6P51797 869 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 SRP54P61011 504 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 OTUD4Q01804 1114 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 XRCC4Q13426 336 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 CCNG2Q16589 344 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 PRR30Q53SZ7 412 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 DNTTIP2Q5QJE6 756 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 DRICH1Q6PGQ1 229 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 BZW1Q7L1Q6 419 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 DCAF4L2Q8NA75 395 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 TP53I13Q8NBR0 393 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 ASB12Q8WXK4 309 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 P3H4Q92791 437 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 ARHGEF2Q92974 986 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 RNF31Q96EP0 1072 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 CTRCQ99895 268 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 TM6SF2Q9BZW4 377 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 MAGEH1Q9H213 219 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 DPEP2Q9H4A9 486 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 RRAGDQ9NQL2 400 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 OCIAD1Q9NX40 245 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 ERRFI1Q9UJM3 462 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 PILRAQ9UKJ1 303 aa13.86□□□□□ -0.19
SHKBP1-218ENST00000598907 ZFHX3Q15911 3703 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 A0A0D9SEW6 157 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 ARHGAP10A1A4S6 786 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 RASA4BC9J798 803 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 KRIT1O00522 736 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 RASA4O43374 803 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 B4GAT1O43505 415 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 RAMP2O60895 175 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 TM7SF2O76062 418 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 PRF1P14222 555 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 PNLIPP16233 465 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 HTR1BP28222 390 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 CSTF2P33240 577 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 MAZP56270 477 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 B4GALNT1Q00973 533 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 MC1RQ01726 317 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 GNA12Q03113 381 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 CKAP4Q07065 602 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 HLTFQ14527 1009 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 POLD3Q15054 466 aaPredicted RBP13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 PARP15Q460N3 678 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 DCAF12Q5T6F0 453 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 CCDC181Q5TID7 509 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 LRRC49Q8IUZ0 686 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 NETO2Q8NC67 525 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 AGBL5Q8NDL9 886 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 OR7D4Q8NG98 312 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 CELF6Q96J87 481 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 TSGA13Q96PP4 275 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 C1QTNF7Q9BXJ2 289 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 AP1M1Q9BXS5 423 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 ASPSCR1Q9BZE9 553 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 HOMER3Q9NSC5 361 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 KCND3Q9UK17 655 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 COQ6Q9Y2Z9 468 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 FCF1Q9Y324 198 aaKnown RBP13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 OR1A2Q9Y585 309 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 KCTD3Q9Y597 815 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 HEY1Q9Y5J3 304 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 HIVEP3Q5T1R4 2406 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 ADGRG4Q8IZF6 3080 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 SHANK1Q9Y566 2161 aa13.85□□□□□ -0.19
SHKBP1-218ENST00000598907 CELSR1Q9NYQ6 3014 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 TNRC6AQ8NDV7 1962 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 TCP11X1B4DZS4 312 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 CCDC188H7C350 402 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 LIASO43766 372 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 ZNF821O75541 412 aaPredicted RBP13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 RFPL1O75677 317 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 LDLRP01130 860 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 MX2P20592 715 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 ACVRL1P37023 503 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 GARSP41250 739 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 PAPOLAP51003 745 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 PPIDQ08752 370 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 NFATC4Q14934 902 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 PDK1Q15118 436 aa13.84□□□□□ -0.19
SHKBP1-218ENST00000598907 OASLQ15646 514 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms