RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TRIM74Q86UV6 250 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 ZNF761Q86XN6 746 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-212ENST00000597995 PQLC3Q8N755 202 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 AVL9Q8NBF6 648 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 LRRN4Q8WUT4 740 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 APOBEC4Q8WW27 367 aaKnown RBP12.4□□□□□ -0.42
TRIM28-212ENST00000597995 CTNNBL1Q8WYA6 563 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-212ENST00000597995 RAPGEF5Q92565 580 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 FAF2Q96CS3 445 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 AGAP2Q99490 1192 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 RIOK2Q9BVS4 552 aaKnown RBP12.4□□□□□ -0.42
TRIM28-212ENST00000597995 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-212ENST00000597995 EPB41L1Q9H4G0 881 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 RMI1Q9H9A7 625 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 NHEJ1Q9H9Q4 299 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-212ENST00000597995 AMACRQ9UHK6 382 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 ZNHIT2Q9UHR6 403 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 KIR2DS5A0A0G2JLQ3 304 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 A0A0G2JNG1 304 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 A0A0U1RQS6 177 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 LOC101059948A0A1B0GTJ6 334 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 CLEC18AA5D8T8 446 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 A6NCN8 305 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 OR5K4A6NMS3 321 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 KIR2DS3K7RE56 304 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 AKR1B10O60218 316 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 STK17BO94768 372 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 ASMTLO95671 621 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 EML2O95834 649 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 NTRK1P04629 796 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 RPL26P61254 145 aaKnown RBP12.39□□□□□ -0.43
TRIM28-212ENST00000597995 GALNT2Q10471 571 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 SLC10A2Q12908 348 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-212ENST00000597995 MAP7Q14244 749 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 KIR2DS5Q14953 304 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 HADHQ16836 314 aaKnown RBP12.39□□□□□ -0.43
TRIM28-212ENST00000597995 SNAP47Q5SQN1 464 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 ALG1LQ6GMV1 187 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 CLEC18BQ6UXF7 455 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 TIPARPQ7Z3E1 657 aaKnown RBP12.39□□□□□ -0.43
TRIM28-212ENST00000597995 SLC9B2Q86UD5 537 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 CLEC18CQ8NCF0 446 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 SLC35G2Q8TBE7 412 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 NCSTNQ92542 709 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 FATE1Q969F0 183 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 LYSMD1Q96S90 227 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 CTRCQ99895 268 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 ZNF670Q9BS34 389 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 HERPUD2Q9BSE4 406 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 NT5MQ9NPB1 228 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 HAUS2Q9NVX0 235 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 TBC1D29Q9UFV1 150 aa12.39□□□□□ -0.43
TRIM28-212ENST00000597995 CNOT6Q9ULM6 557 aaKnown RBP12.39□□□□□ -0.43
TRIM28-212ENST00000597995 RPL26L1Q9UNX3 145 aaKnown RBP12.39□□□□□ -0.43
TRIM28-212ENST00000597995 RGSL1A5PLK6 1076 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 C3orf70A6NLC5 250 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 POLR1CO15160 346 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 INPP4BO15327 924 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 MTA2O94776 668 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 DLGAP3O95886 979 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 ANKRD34CP0C6C1 535 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 CA4P22748 312 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 GARSP41250 739 aaKnown RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 NOP2P46087 812 aaKnown RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 GBE1Q04446 702 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 ITKQ08881 620 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 NFATC2Q13469 925 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 MESDQ14696 234 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 PDK2Q15119 407 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 FAM182AQ5T1J6 154 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 TIGD7Q6NT04 549 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 SARM1Q6SZW1 724 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 CHST15Q7LFX5 561 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 LYSMD3Q7Z3D4 306 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 KDELC2Q7Z4H8 507 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 PLXDC1Q8IUK5 500 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 ESX1Q8N693 406 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 KCTD6Q8NC69 237 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 MAML1Q92585 1016 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 CCDC42Q96M95 316 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 SMIM14Q96QK8 99 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 TDRD1Q9BXT4 1180 aaKnown RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 DEF6Q9H4E7 631 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 ZNF71Q9NQZ8 489 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 ZNHIT6Q9NWK9 470 aaKnown RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 CHKBQ9Y259 395 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 PCYT1BQ9Y5K3 369 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 OAS3Q9Y6K5 1087 aaKnown RBP12.38□□□□□ -0.43
TRIM28-212ENST00000597995 LRRK2Q5S007 2527 aa12.38□□□□□ -0.43
TRIM28-212ENST00000597995 LILRA5A6NI73 299 aa12.37□□□□□ -0.43
TRIM28-212ENST00000597995 AKR1B15C9JRZ8 316 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-212ENST00000597995 MATN3O15232 486 aa12.37□□□□□ -0.43
TRIM28-212ENST00000597995 CLDN7O95471 211 aa12.37□□□□□ -0.43
TRIM28-212ENST00000597995 PRLP01236 227 aa12.37□□□□□ -0.43
TRIM28-212ENST00000597995 ATP1A1P05023 1023 aaKnown RBP12.37□□□□□ -0.43
TRIM28-212ENST00000597995 KRT7P08729 469 aa12.37□□□□□ -0.43
TRIM28-212ENST00000597995 PRKAR1AP10644 381 aa12.37□□□□□ -0.43
TRIM28-212ENST00000597995 F3P13726 295 aa12.37□□□□□ -0.43
TRIM28-212ENST00000597995 TCN2P20062 427 aa12.37□□□□□ -0.43
TRIM28-212ENST00000597995 KDELR1P24390 212 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms