RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TNK2Q07912 1038 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 NHSL2Q5HYW2 709 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.79□□□□□ -0.68
CLK3-226ENST00000569406 GDPD3Q7L5L3 318 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 EFL1Q7Z2Z2 1120 aaKnown RBP10.79□□□□□ -0.68
CLK3-226ENST00000569406 MAMDC2Q7Z304 686 aaPredicted RBP10.79□□□□□ -0.68
CLK3-226ENST00000569406 STRA8Q7Z7C7 330 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 LNX2Q8N448 690 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 STON2Q8WXE9 905 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 PHOX2BQ99453 314 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 COPS4Q9BT78 406 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 TMEM168Q9H0V1 697 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 OR51B5Q9H339 312 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 SORCS3Q9UPU3 1222 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 PRELID3BQ9Y3B1 194 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 TTLL8A6PVC2 850 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 SOCS2O14508 198 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 RHOBTB1O94844 696 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 IL18RAPO95256 599 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 IQCF3P0C7M6 154 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 TNNI3P19429 210 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 MAOBP27338 520 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 AIF1P55008 147 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 TFAMQ00059 246 aaKnown RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 PUDPQ08623 228 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 PTK6Q13882 451 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 LTB4RQ15722 352 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 SNX20Q7Z614 316 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 APOBEC3FQ8IUX4 373 aaKnown RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 GAL3ST1Q99999 423 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 NAT9Q9BTE0 207 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 NGRNQ9NPE2 291 aaKnown RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 DUS2Q9NX74 493 aaKnown RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 KIF17Q9P2E2 1029 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 CDK14O94921 469 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 HOXD4P09016 255 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 CSTF2P33240 577 aaKnown RBP eCLIP10.78□□□□□ -0.68
CLK3-226ENST00000569406 CSKP41240 450 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 NOMO3P69849 1222 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 GPS1Q13098 491 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 SLC12A1Q13621 1099 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 ACOX1Q15067 660 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 BTBD16Q32M84 506 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 RETSATQ6NUM9 610 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 CBR4Q8N4T8 237 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 WDTC1Q8N5D0 677 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 CAMKK1Q8N5S9 505 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 DLG3Q92796 817 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 NUSAP1Q9BXS6 441 aaKnown RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 HDHD5Q9BXW7 423 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 ELOVL6Q9H5J4 265 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 SOX17Q9H6I2 414 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 SNX15Q9NRS6 342 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 IFT80Q9P2H3 777 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 IGKV6-21A0A0C4DH24 114 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 MAFO75444 373 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 PTTG1O95997 202 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 EIF2DP41214 584 aaKnown RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 NME5P56597 212 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 TAS2R40P59535 323 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 HIST2H2ACQ16777 129 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 VWA5B1Q5TIE3 1220 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 ANKS3Q6ZW76 656 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 ZNF767PQ75MW2 155 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 CEP68Q76N32 757 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 METTL4Q8N3J2 472 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 OR4M2Q8NGB6 313 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 OR6Q1Q8NGQ2 317 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 ZNF578Q96N58 590 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 ASB2Q96Q27 587 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 GAS2L1Q99501 681 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 CINPQ9BW66 212 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 LRRC40Q9H9A6 602 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 STARD7Q9NQZ5 370 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 ZNF302Q9NR11 478 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 EVLQ9UI08 416 aaPredicted RBP10.78□□□□□ -0.68
CLK3-226ENST00000569406 HSPB11Q9Y547 144 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 SLC22A7Q9Y694 548 aa10.78□□□□□ -0.68
CLK3-226ENST00000569406 TRBV23-1A0A0A0MS06 115 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 WWP2O00308 870 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 ECDO95905 644 aaPredicted RBP10.77□□□□□ -0.68
CLK3-226ENST00000569406 RALAP11233 206 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 ME2P23368 584 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 DDOSTP39656 456 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 KCNJ5P48544 419 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 DEFA1P59665 94 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 DEFA3P59666 94 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 MAMLD1Q13495 774 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 LY6KQ17RY6 165 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 HSDL1Q3SXM5 330 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 CYP2R1Q6VVX0 501 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 KIF18BQ86Y91 864 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 RIOX2Q8IUF8 465 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 SLC22A15Q8IZD6 547 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 ATAD1Q8NBU5 361 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 C19orf43Q9BQ61 176 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 COG4Q9H9E3 785 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 PTPRHQ9HD43 1115 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 C1orf112Q9NSG2 853 aa10.77□□□□□ -0.68
CLK3-226ENST00000569406 TMEM39AQ9NV64 488 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms