RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ECHDC1Q9NTX5 307 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 RRN3Q9NYV6 651 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 LUZP4Q9P127 313 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 ZNF624Q9P2J8 865 aaPredicted RBP2.73□□□□□ -1.97
VPS35-207ENST00000568191 SLC13A4Q9UKG4 626 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 MAU2Q9Y6X3 613 aa2.73□□□□□ -1.97
VPS35-207ENST00000568191 OR5K3A6NET4 321 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 M0QZ24 198 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 CIDEAO60543 219 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 CTSVO60911 334 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 UBA7P41226 1012 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 PRCPP42785 496 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 RARSP54136 660 aaKnown RBP2.72□□□□□ -1.97
VPS35-207ENST00000568191 COG7P83436 770 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 ZBED6P86452 979 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 GALNT2Q10471 571 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 FGFBP1Q14512 234 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 DHX8Q14562 1220 aaKnown RBP2.72□□□□□ -1.97
VPS35-207ENST00000568191 COL28A1Q2UY09 1125 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 ZC2HC1BQ5TFG8 222 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 TSSK4Q6SA08 328 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 CYP26C1Q6V0L0 522 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 DPPA4Q7L190 304 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 LONP2Q86WA8 852 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 CCDC13Q8IYE1 715 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 ADSSL1Q8N142 457 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 OR5R1Q8NH85 324 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 NFKBIDQ8NI38 313 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 UTP15Q8TED0 518 aaKnown RBP2.72□□□□□ -1.97
VPS35-207ENST00000568191 ANKRD9Q96BM1 317 aaPredicted RBP2.72□□□□□ -1.97
VPS35-207ENST00000568191 ARHGEF26Q96DR7 871 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 RNF125Q96EQ8 232 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 RRNAD1Q96FB5 475 aaKnown RBP2.72□□□□□ -1.97
VPS35-207ENST00000568191 TRIM51Q9BSJ1 452 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 RAD21L1Q9H4I0 556 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 SLC28A3Q9HAS3 691 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 SEBOXQ9HB31 216 aaPredicted RBP2.72□□□□□ -1.97
VPS35-207ENST00000568191 LTB4R2Q9NPC1 389 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.72□□□□□ -1.97
VPS35-207ENST00000568191 DLGAP2Q9P1A6 1054 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 STK39Q9UEW8 545 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 OR14J1Q9UGF5 321 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 SARDHQ9UL12 918 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 CAMK2AQ9UQM7 478 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 DGKBQ9Y6T7 804 aa2.72□□□□□ -1.97
VPS35-207ENST00000568191 FAM237AA0A1B0GTK4 181 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 A0A1W2PPI3 338 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 A0A1W2PRG0 241 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 CTAGE9A4FU28 777 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 EIF4E1BA6NMX2 242 aaKnown RBP2.71□□□□□ -1.98
VPS35-207ENST00000568191 ANKRD28O15084 1053 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 HOXC11O43248 304 aaPredicted RBP2.71□□□□□ -1.98
VPS35-207ENST00000568191 JRKO75564 520 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 SEC31AO94979 1220 aaKnown RBP2.71□□□□□ -1.98
VPS35-207ENST00000568191 BAG4O95429 457 aaKnown RBP2.71□□□□□ -1.98
VPS35-207ENST00000568191 NR3C1P04150 777 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 PYGLP06737 847 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 PLA2G4BP0C869 781 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 CTAGE8P0CG41 777 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 PRSS56P0CW18 603 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 UGT1A1P22309 533 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 KRTAP5-9P26371 169 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 DCTP40126 519 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 KRTAP10-12P60413 245 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 GOLGA8DPQ0D2H9 430 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 LRMPQ12912 555 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 ITGA9Q13797 1035 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 KIR2DS3Q14952 304 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 CCNG2Q16589 344 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 DPCR1Q3MIW9 517 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 TECRLQ5HYJ1 363 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 WDR38Q5JTN6 314 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 ARHGAP17Q68EM7 881 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 FAAP20Q6NZ36 180 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 CDC73Q6P1J9 531 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 ZNF790Q6PG37 636 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 PAPD4Q6PIY7 484 aaKnown RBP2.71□□□□□ -1.98
VPS35-207ENST00000568191 PACS1Q6VY07 963 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 RBMS3Q6XE24 437 aaKnown RBP2.71□□□□□ -1.98
VPS35-207ENST00000568191 C15orf39Q6ZRI6 1047 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 TRPT1Q86TN4 253 aaKnown RBP2.71□□□□□ -1.98
VPS35-207ENST00000568191 ARMC8Q8IUR7 673 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 CTAGE4Q8IX94 777 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 HMGCLL1Q8TB92 370 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 FAM149B1Q96BN6 582 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 SEMA3CQ99985 751 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 TMEM39BQ9GZU3 492 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 SLC52A3Q9NQ40 469 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 ZDHHC18Q9NUE0 388 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 ADPRHL2Q9NX46 363 aa2.71□□□□□ -1.98
VPS35-207ENST00000568191 KANSL1LA0AUZ9 987 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 FAM90A26D6RGX4 464 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 ARHGEF9O43307 516 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 TPD52L2O43399 206 aaKnown RBP2.7□□□□□ -1.98
VPS35-207ENST00000568191 EXTL3O43909 919 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 SLC25A12O75746 678 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 PATE4P0C8F1 98 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 GNAZP19086 355 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms