RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 PJA1Q8NG27 643 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.13□□□□□ -0.79
SRP54-208ENST00000555557 FAM131CQ96AQ9 280 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 NUS1Q96E22 293 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 BIRC8Q96P09 236 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 TCF12Q99081 682 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 MLXIPLQ9NP71 852 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 INTS10Q9NVR2 710 aaKnown RBP10.13□□□□□ -0.79
SRP54-208ENST00000555557 SCML1Q9UN30 329 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 NCKAP1Q9Y2A7 1128 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 VWA7Q9Y334 891 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 PRSS21Q9Y6M0 314 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 NCOR1O75376 2440 aa10.13□□□□□ -0.79
SRP54-208ENST00000555557 TMEM120BA0PK00 339 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 VGLL3A8MV65 326 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 INPP4BO15327 924 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 ATG13O75143 517 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 TM7SF2O76062 418 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 SOD1P00441 154 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 CLCN5P51795 746 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 DCDC1P59894 354 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 PPP2R2AP63151 447 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 IRF9Q00978 393 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 ITGA9Q13797 1035 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 PDE1CQ14123 709 aaPredicted RBP10.12□□□□□ -0.79
SRP54-208ENST00000555557 GPR33Q49SQ1 333 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 SETMARQ53H47 684 aaPredicted RBP10.12□□□□□ -0.79
SRP54-208ENST00000555557 CTSL3PQ5NE16 218 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 CERS6Q6ZMG9 384 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 RAPH1Q70E73 1250 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 PIM3Q86V86 326 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 NRSN1Q8IZ57 195 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 SPATA6LQ8N4H0 392 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 TRAM1L1Q8N609 369 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 FRMD1Q8N878 549 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 ANKRD42Q8N9B4 389 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 BANPQ8N9N5 519 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 PLA2G15Q8NCC3 412 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 TSTD1Q8NFU3 115 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 FAM76AQ8TAV0 307 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 GDAP1Q8TB36 358 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 TPSD1Q9BZJ3 242 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 VPS11Q9H270 941 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 GALPQ9UBC7 116 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 MBD1Q9UIS9 605 aaPredicted RBP10.12□□□□□ -0.79
SRP54-208ENST00000555557 SIT1Q9Y3P8 196 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 ACTL7BQ9Y614 415 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 SCN8AQ9UQD0 1980 aa10.12□□□□□ -0.79
SRP54-208ENST00000555557 A0A096LPK6 155 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 A0A1W2PQU0 124 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 RGSL1A5PLK6 1076 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 PI15O43692 258 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 TYROBPO43914 113 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 RNGTTO60942 597 aaKnown RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 C2P06681 752 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 RPA3P35244 121 aaPredicted RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 PTGER3P43115 390 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 SERPINB8P50452 374 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 PPP2CBP62714 309 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 PPP2CAP67775 309 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 B4GALNT1Q00973 533 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 TIAL1Q01085 375 aaKnown RBP eCLIP10.11□□□□□ -0.796e-7■■■■□ 24.2
SRP54-208ENST00000555557 CREB5Q02930 508 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 SLC18A2Q05940 514 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 MTAPQ13126 283 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 DNAJC3Q13217 504 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 KHDC1Q4VXA5 237 aaKnown RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 GPRC6AQ5T6X5 926 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 TTC19Q6DKK2 380 aaPredicted RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 RAET1GQ6H3X3 334 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 USP30Q70CQ3 517 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 DET1Q7L5Y6 550 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 CYP2U1Q7Z449 544 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 KBTBD6Q86V97 674 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 PLD6Q8N2A8 252 aaKnown RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 MGARPQ8TDB4 240 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 RLN3Q8WXF3 142 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 FUBP1Q96AE4 644 aaKnown RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 CLDN23Q96B33 292 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 AARSD1Q9BTE6 412 aaKnown RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 ZSCAN5AQ9BUG6 496 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 UNKQ9C0B0 810 aaKnown RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 ITM2CQ9NQX7 267 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 MBNL1Q9NR56 388 aaKnown RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 RAD18Q9NS91 495 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 ZNF358Q9NW07 568 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 SENP1Q9P0U3 644 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 FZD4Q9ULV1 537 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 CYP8B1Q9UNU6 501 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 MED16Q9Y2X0 877 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 COPEO14579 308 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 PRMT5O14744 637 aaPredicted RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 PFDN6O15212 129 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 NIPSNAP2O75323 286 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 RHOBTB1O94844 696 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 PCCBP05166 539 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 SLC35E2BP0CK96 405 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 C7P10643 843 aa10.11□□□□□ -0.79
SRP54-208ENST00000555557 PKMP14618 531 aaKnown RBP10.11□□□□□ -0.79
SRP54-208ENST00000555557 STMN1P16949 149 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms