RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NIPSNAP2O75323 286 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 PENKP01210 267 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 HSD17B1P14061 328 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 PSMA4P25789 261 aaKnown RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 IL12AP29459 219 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 OR1G1P47890 313 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 CDK9P50750 372 aaKnown RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 CCT8P50990 548 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 SUOXP51687 545 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 PLIN5Q00G26 463 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 IL10RBQ08334 325 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 MERTKQ12866 999 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 TAF10Q12962 218 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 LCP2Q13094 533 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 NFYCQ13952 458 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 ZNF235Q14590 738 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 TBC1D25Q3MII6 688 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 TIGD2Q4W5G0 525 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 C10orf120Q5SQS8 335 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 LCN8Q6JVE9 175 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 PSAPL1Q6NUJ1 521 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 TTC33Q6PID6 262 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 TBPL2Q6SJ96 375 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 RAB44Q7Z6P3 723 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 RTN4RL1Q86UN2 441 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 MDGA1Q8NFP4 955 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 OR4K2Q8NGD2 314 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 BRSK1Q8TDC3 778 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 FBXO32Q969P5 355 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 ZUFSPQ96AP4 578 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 MYRFLQ96LU7 910 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 HOPXQ9BPY8 73 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-213ENST00000552720 ALG2Q9H553 416 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 BPIFA1Q9NP55 256 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 MARCH2Q9P0N8 246 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 TMCO1Q9UM00 188 aa7.45□□□□□ -1.22
LIMA1-213ENST00000552720 A0A0J9YVX5 310 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 AQP12BA6NM10 295 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 BTN3A1O00481 513 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 TNPO2O14787 897 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 TSPAN3O60637 253 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 PRAMEF11O60813 436 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 KERAO60938 352 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 CRCPO75575 148 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 MATN4O95460 622 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SNAP29O95721 258 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 C1RP00736 705 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 FGF1P05230 155 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 TYMPP19971 482 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 IL10P22301 178 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 FASP25445 335 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 VARSP26640 1264 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 PBX3P40426 434 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 HK3P52790 923 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SH3BGRP55822 239 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 LIPEQ05469 1076 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 INPP5AQ14642 412 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 PLCL1Q15111 1095 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ADRM1Q16186 407 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 C18orf21Q32NC0 220 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ZBTB46Q86UZ6 589 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 CAMK1DQ8IU85 385 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 AQP12AQ8IXF9 295 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 PIANPQ8IYJ0 282 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 DCP1BQ8IZD4 617 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ATP6V0D2Q8N8Y2 350 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SIDT2Q8NBJ9 832 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 OR52B6Q8NGF0 335 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 RHEBL1Q8TAI7 183 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 MAGEE2Q8TD90 523 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 FUBP1Q96AE4 644 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 HSPBAP1Q96EW2 488 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 FEM1CQ96JP0 617 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 BTN2A3PQ96KV6 586 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 TFB2MQ9H5Q4 396 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 RPF2Q9H7B2 306 aaKnown RBP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 MRGBPQ9NV56 204 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.44□□□□□ -1.22
LIMA1-213ENST00000552720 RHBDL2Q9NX52 303 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ACTR3BQ9P1U1 418 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 HCSTQ9UBK5 93 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SLC8A2Q9UPR5 921 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 A0A1W2PP18 115 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 TCRBV5S2A0A599 114 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 IQCF5A8MTL0 148 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 B4GAT1O43505 415 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 OR4F21O95013 312 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 IGHA2P01877 340 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 CYBBP04839 570 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 ASGR1P07306 291 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 BMP1P13497 986 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 HLA-DPA1P20036 260 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 MYF6P23409 242 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SLC6A4P31645 630 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SCNN1BP51168 640 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 CLCN2P51788 898 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 MAPK10P53779 464 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 OR4D2P58180 307 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 TNK2Q07912 1038 aa7.44□□□□□ -1.22
LIMA1-213ENST00000552720 SELPLGQ14242 412 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms