RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 HPS4Q9NQG7 708 aa13.34□□□□□ -0.27
PTCH1-215ENST00000547672 LATS2Q9NRM7 1088 aa13.34□□□□□ -0.27
PTCH1-215ENST00000547672 HEY2Q9UBP5 337 aa13.34□□□□□ -0.27
PTCH1-215ENST00000547672 B4GALT6Q9UBX8 382 aa13.34□□□□□ -0.27
PTCH1-215ENST00000547672 HAO1Q9UJM8 370 aa13.34□□□□□ -0.27
PTCH1-215ENST00000547672 RNF112Q9ULX5 631 aa13.34□□□□□ -0.27
PTCH1-215ENST00000547672 TRIM33Q9UPN9 1127 aa13.34□□□□□ -0.27
PTCH1-215ENST00000547672 FNDC3AQ9Y2H6 1198 aaKnown RBP13.34□□□□□ -0.27
PTCH1-215ENST00000547672 TK2O00142 265 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 KERAO60938 352 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 KAT7O95251 611 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 S100BP04271 92 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-215ENST00000547672 CHRM1P11229 460 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-215ENST00000547672 HNRNPLP14866 589 aaKnown RBP eCLIP13.33□□□□□ -0.28
PTCH1-215ENST00000547672 ALOX15P16050 662 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-215ENST00000547672 GDI1P31150 447 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 GJA4P35212 333 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 SLC6A11P48066 632 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 MNAT1P51948 309 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 AQP5P55064 265 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 ACTN3Q08043 901 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-215ENST00000547672 DLG1Q12959 904 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 BNIP1Q12981 228 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 ZNF460Q14592 562 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 KRT72Q14CN4 511 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 CTC1Q2NKJ3 1217 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 FAM91A1Q658Y4 838 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 SDE2Q6IQ49 451 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 FBXL19Q6PCT2 694 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 PAQR3Q6TCH7 311 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 ZCCHC23Q6ZST2 131 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 TRAM1L1Q8N609 369 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 CCNYL1Q8N7R7 359 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 RFWD2Q8NHY2 731 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 EID2BQ96D98 161 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 L3HYPDHQ96EM0 354 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 GPR21Q99679 349 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 POMKQ9H5K3 350 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 ALG9Q9H6U8 611 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 FBRSQ9HAH7 460 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 PCDH12Q9NPG4 1184 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 SPATS2LQ9NUQ6 558 aaKnown RBP13.33□□□□□ -0.28
PTCH1-215ENST00000547672 SMOXQ9NWM0 555 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 THAP10Q9P2Z0 257 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-215ENST00000547672 EPS15L1Q9UBC2 864 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 FAM50BQ9Y247 325 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 STK38LQ9Y2H1 464 aa13.33□□□□□ -0.28
PTCH1-215ENST00000547672 TNPO3Q9Y5L0 923 aaKnown RBP13.33□□□□□ -0.28
PTCH1-215ENST00000547672 C2orf16Q68DN1 1984 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 H0YHG0 523 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 KPNA3O00505 521 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-215ENST00000547672 HDAC3O15379 428 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 LINC01565O15544 149 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 SNX2O60749 519 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 FSBPO95073 299 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ENO3P13929 434 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-215ENST00000547672 MAPK9P45984 424 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 HERVK_113P63132 956 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 SFSWAPQ12872 951 aaKnown RBP13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ZNF234Q14588 700 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ZRSR2Q15696 482 aaKnown RBP13.32□□□□□ -0.28
PTCH1-215ENST00000547672 LDLRAP1Q5SW96 308 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 C9orf64Q5T6V5 341 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 SEL1L3Q68CR1 1132 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 METTL2BQ6P1Q9 378 aaKnown RBP13.32□□□□□ -0.28
PTCH1-215ENST00000547672 TTC23LQ6PF05 361 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ACAD11Q709F0 780 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ZNF765Q7L2R6 523 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 CYP2U1Q7Z449 544 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ADAMTSL2Q86TH1 951 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 MTDHQ86UE4 582 aaKnown RBP13.32□□□□□ -0.28
PTCH1-215ENST00000547672 NLRP8Q86W28 1048 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ZSWIM9Q86XI8 627 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 MYO1HQ8N1T3 1032 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 CHCHD4Q8N4Q1 142 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 FITM2Q8N6M3 262 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ANKRD49Q8WVL7 239 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 SORCS1Q8WY21 1168 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 PPM1EQ8WY54 764 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 THOC1Q96FV9 657 aaKnown RBP13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ZFYVE19Q96K21 471 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 MYADMQ96S97 322 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 SPATA16Q9BXB7 569 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ERVK-6Q9BXR3 956 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 TMEM245Q9H330 911 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 KCNK13Q9HB14 408 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 ABCF3Q9NUQ8 709 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 CLDND1Q9NY35 253 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 CLEC1BQ9P126 229 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 PPM1HQ9ULR3 514 aa13.32□□□□□ -0.28
PTCH1-215ENST00000547672 A0A1W2PPC1 479 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 PABPN1LA6NDY0 278 aaKnown RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 PRRT4C9JH25 899 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 STX16-NPEPL1H3BU86 382 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 STX16O14662 325 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 WNT9AO14904 365 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 TRIM24O15164 1050 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 ITM2AO43736 263 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 DNAJC8O75937 253 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 UBOX5O94941 541 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms