RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 KCNK4Q9NYG8 393 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 PRKAB1Q9Y478 270 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 TTLL3Q9Y4R7 772 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 PCDHGA3Q9Y5H0 932 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 B3GALT1Q9Y5Z6 326 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 SCN8AQ9UQD0 1980 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 FADS2P1A8MWK0 482 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 JCHAINP01591 159 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 GYPCP04921 128 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 ITGB2P05107 769 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 PYGLP06737 847 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 MMP2P08253 660 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 FAM87AP0C7U9 286 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 CSTF2P33240 577 aaKnown RBP eCLIP8.39□□□□□ -1.07
USP28-215ENST00000545608 FASLGP48023 281 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 SPINT3P49223 89 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 NFKB2Q00653 900 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 PEX6Q13608 980 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 PDK2Q15119 407 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.39□□□□□ -1.07
USP28-215ENST00000545608 XKR5Q6UX68 686 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 CHST15Q7LFX5 561 aaPredicted RBP8.39□□□□□ -1.07
USP28-215ENST00000545608 GALNT13Q8IUC8 556 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 SFRP1Q8N474 314 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 CNTD1Q8N815 330 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 AGBL5Q8NDL9 886 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 RAPGEF5Q92565 580 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 ART4Q93070 314 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 FATE1Q969F0 183 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 FAF2Q96CS3 445 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 LYSMD1Q96S90 227 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 SLC38A3Q99624 504 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 ZNF670Q9BS34 389 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 SLC12A9Q9BXP2 914 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 PACSIN1Q9BY11 444 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 STARD5Q9NSY2 213 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 DTLQ9NZJ0 730 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 CTTNBP2NLQ9P2B4 639 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 PDP2Q9P2J9 529 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 TBC1D29Q9UFV1 150 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 AMACRQ9UHK6 382 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 ZNHIT2Q9UHR6 403 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 KCNK6Q9Y257 313 aa8.39□□□□□ -1.07
USP28-215ENST00000545608 LUC7L2Q9Y383 392 aaKnown RBP8.39□□□□□ -1.07
USP28-215ENST00000545608 CFAP46Q8IYW2 2715 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 FLNBO75369 2602 aaKnown RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 C1orf232A0A0U1RR37 186 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 SYCE3A1L190 88 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 EFCAB7A8K855 629 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 A8MU76 341 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 ANKRD66B4E2M5 251 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 STMND1H3BQB6 276 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 KCNK1O00180 336 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 ICMTO60725 284 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 SNX2O60749 519 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 WISP1O95388 367 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 KDELR1P24390 212 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 CASP14P31944 242 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 UGT1A3P35503 534 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 CD86P42081 329 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 RPL26P61254 145 aaKnown RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 GPLD1P80108 840 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 HHEXQ03014 270 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 ZBTB17Q13105 803 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 NFATC2Q13469 925 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 LRP8Q14114 963 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 CLCA4Q14CN2 919 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 SNAP47Q5SQN1 464 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 ZNF648Q5T619 568 aaPredicted RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 HENMT1Q5T8I9 393 aaKnown RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 ANKS6Q68DC2 871 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 IYDQ6PHW0 289 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 PRICKLE2Q7Z3G6 844 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 FAM129CQ86XR2 697 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 MAP7D3Q8IWC1 876 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 RAVER1Q8IY67 606 aaKnown RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 CCDC13Q8IYE1 715 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 BMPERQ8N8U9 685 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 ZSCAN1Q8NBB4 408 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 CCNYQ8ND76 341 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 RNF166Q96A37 237 aaPredicted RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 EID2BQ96D98 161 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 HDAC11Q96DB2 347 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 AHCYL2Q96HN2 611 aaKnown RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 RNF157Q96PX1 679 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 DPYSL5Q9BPU6 564 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 MLPHQ9BV36 600 aaPredicted RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 DDA1Q9BW61 102 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 SPRY4Q9C004 299 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 FAM83DQ9H4H8 585 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 ARFGAP3Q9NP61 516 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 SARS2Q9NP81 518 aaKnown RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 SLC39A1Q9NY26 324 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 IFNKQ9P0W0 207 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 VPS18Q9P253 973 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 DNPEPQ9ULA0 475 aa8.38□□□□□ -1.07
USP28-215ENST00000545608 RPL26L1Q9UNX3 145 aaKnown RBP8.38□□□□□ -1.07
USP28-215ENST00000545608 A6NCN8 305 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 TMEM229AB2RXF0 380 aa8.37□□□□□ -1.07
USP28-215ENST00000545608 B4E171 279 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms