RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 CXorf56Q9H5V9 222 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 AKTIPQ9H8T0 292 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 TLR9Q9NR96 1032 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 HCFC1R1Q9NWW0 138 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 PRPF19Q9UMS4 504 aaKnown RBP16.21■□□□□ 0.19
COL4A1-204ENST00000543140 BTRCQ9Y297 605 aa16.21■□□□□ 0.19
COL4A1-204ENST00000543140 C1orf232A0A0U1RR37 186 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 AZIN1O14977 448 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 PIP5K1BO14986 540 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 CCL16O15467 120 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 CTSAP10619 480 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 CA5AP35218 305 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 IL2P60568 153 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 AP1S1P61966 158 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 BCL2L1Q07817 233 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 SQLEQ14534 574 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 MMEL1Q495T6 779 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 PIGGQ5H8A4 983 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 HTR3DQ70Z44 454 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 CMTM8Q8IZV2 173 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 NKAPQ8N5F7 415 aaKnown RBP16.2■□□□□ 0.18
COL4A1-204ENST00000543140 KLHL23Q8NBE8 558 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 FAM156AQ8NDB6 213 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 TWIST2Q8WVJ9 160 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 SLC46A2Q9BY10 475 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 MAGEE1Q9HCI5 957 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 STK39Q9UEW8 545 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 H7C0S8 307 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 LINC00032P0C843 101 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 ITGB6P18564 788 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 CTSOP43234 321 aaPredicted RBP16.2■□□□□ 0.18
COL4A1-204ENST00000543140 STK19P49842 368 aaPredicted RBP16.2■□□□□ 0.18
COL4A1-204ENST00000543140 ZNF423Q2M1K9 1284 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 DGKKQ5KSL6 1271 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 FIBCD1Q8N539 461 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 JADE3Q92613 823 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 ADAMTS6Q9UKP5 1117 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 INTS6Q9UL03 887 aaKnown RBP16.2■□□□□ 0.18
COL4A1-204ENST00000543140 CCL26Q9Y258 94 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 ASB3Q9Y575 518 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 TIMM22Q9Y584 194 aa16.2■□□□□ 0.18
COL4A1-204ENST00000543140 TRAV19A0A0A6YYK7 116 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 LEFTY2O00292 366 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 CLDN7O95471 211 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 PRAMEF1O95521 474 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 ALDOCP09972 364 aaKnown RBP16.19■□□□□ 0.18
COL4A1-204ENST00000543140 HSPA1AP0DMV8 641 aaKnown RBP16.19■□□□□ 0.18
COL4A1-204ENST00000543140 HSPA1BP0DMV9 641 aaKnown RBP16.19■□□□□ 0.18
COL4A1-204ENST00000543140 PTGER3P43115 390 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 CACNG1Q06432 222 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 AARS2Q5JTZ9 985 aaKnown RBP16.19■□□□□ 0.18
COL4A1-204ENST00000543140 PAOXQ6QHF9 649 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 IZUMO2Q6UXV1 221 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 DHDDSQ86SQ9 333 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 ZNF184Q99676 751 aaPredicted RBP16.19■□□□□ 0.18
COL4A1-204ENST00000543140 TUBB1Q9H4B7 451 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 ZFYVE1Q9HBF4 777 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 ADA2Q9NZK5 511 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 SYCE1LA8MT33 242 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 FBP2O00757 339 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 PRDX3P30048 256 aaKnown RBP16.19■□□□□ 0.18
COL4A1-204ENST00000543140 HK3P52790 923 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 SLC7A9P82251 487 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 MS4A2Q01362 244 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 GRB7Q14451 532 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 PLEKHG6Q3KR16 790 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 MPPE1Q53F39 396 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 LPCAT4Q643R3 524 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 ANKS6Q68DC2 871 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 ANO7Q6IWH7 933 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 LAYNQ6UX15 382 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 DCBLD1Q8N8Z6 715 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 KREMEN2Q8NCW0 462 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 KCNJ9Q92806 393 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 BOCQ9BWV1 1114 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 CD274Q9NZQ7 290 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 ASB1Q9Y576 335 aa16.19■□□□□ 0.18
COL4A1-204ENST00000543140 PIKFYVEQ9Y2I7 2098 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 ZNF821O75541 412 aaPredicted RBP16.18■□□□□ 0.18
COL4A1-204ENST00000543140 CRCPO75575 148 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 FGF4P08620 206 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 HNF1BP35680 557 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 CCR2P41597 374 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 CLCN4P51793 760 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 LCP2Q13094 533 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 FLOT2Q14254 428 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 KIF19Q2TAC6 998 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 KANK2Q63ZY3 851 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 KBTBD6Q86V97 674 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 GPSM1Q86YR5 675 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 CLDN19Q8N6F1 224 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 ACDQ96AP0 544 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 ASB2Q96Q27 587 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 C11orf49Q9H6J7 331 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 ABCB8Q9NUT2 735 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 KIAA1522Q9P206 1035 aaPredicted RBP16.18■□□□□ 0.18
COL4A1-204ENST00000543140 C9JVG2 144 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 ESR1P03372 595 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 UGT1A6P19224 532 aa16.18■□□□□ 0.18
COL4A1-204ENST00000543140 UGT1A1P22309 533 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms