RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 RNF215Q9Y6U7 377 aa8.68□□□□□ -1.02
CLSTN3-212ENST00000541770 PIEZO2Q9H5I5 2752 aa8.68□□□□□ -1.02
CLSTN3-212ENST00000541770 TTC24A2A3L6 582 aaPredicted RBP8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 BLACEA4D250 179 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 C9orf172C9J069 976 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 AREL1O15033 823 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ZNF185O15231 689 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 PGLSO95336 258 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 TNFP01375 233 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 TIMP2P16035 220 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 XPAP23025 273 aaPredicted RBP8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 NFKBIAP25963 317 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 HTR1BP28222 390 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 CASQ1P31415 396 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 CD86P42081 329 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ATP1A2P50993 1020 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 POLE2P56282 527 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 RPL26P61254 145 aaKnown RBP8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ELP6Q0PNE2 266 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 TRAF2Q12933 501 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 KCNAB2Q13303 367 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 IHHQ14623 411 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 IRF4Q15306 451 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 CYP1B1Q16678 543 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ALG11Q2TAA5 492 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 P3H1Q32P28 736 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ANKRD20A2Q5SQ80 823 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 CFAP58Q5T655 872 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ARMC12Q5T9G4 340 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ANKRD20A1Q5TYW2 823 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ANKRD20A3Q5VUR7 823 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ITPRIPL1Q6GPH6 555 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 LVRNQ6Q4G3 990 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 SYT10Q6XYQ8 523 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 TAF8Q7Z7C8 310 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 PRELID2Q8N945 189 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 UNC13CQ8NB66 2214 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 TP53I13Q8NBR0 393 aaPredicted RBP8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 FAM46DQ8NEK8 389 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 OR6C4Q8NGE1 309 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 C1orf54Q8WWF1 131 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ASB12Q8WXK4 309 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ATG4AQ8WYN0 398 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 MS4A14Q96JA4 679 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 SPATA13Q96N96 652 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 PPP1R2P1Q96PQ5 205 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 TDRD1Q9BXT4 1180 aaKnown RBP8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 CEP41Q9BYV8 373 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 GBA3Q9H227 469 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ADNPQ9H2P0 1102 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 C10orf88Q9H8K7 445 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 LRRC4CQ9HCJ2 640 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 ZNF71Q9NQZ8 489 aaPredicted RBP8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 KLQ9UEF7 1012 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 FAM153AQ9UHL3 310 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 MOSPD1Q9UJG1 213 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 PHTF1Q9UMS5 762 aa8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 RPL26L1Q9UNX3 145 aaKnown RBP8.67□□□□□ -1.02
CLSTN3-212ENST00000541770 SDK2Q58EX2 2172 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 GOLGA6L10A0A0M3HER8 536 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 B4DGG1 531 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 STMND1H3BQB6 276 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 KIF2AO00139 706 aaPredicted RBP8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 ANXA9O76027 345 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 CPP00450 1065 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 PRLP01236 227 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 EPOP01588 193 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 PCCBP05166 539 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 GLB1P16278 677 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 NFKB1P19838 968 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 CCR10P46092 362 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 PPM1FP49593 454 aaPredicted RBP8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 GDF10P55107 478 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 SRP54P61011 504 aaKnown RBP8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 FOXK1P85037 733 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 MPP3Q13368 585 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 LRRC14Q15048 493 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 AMZ1Q400G9 498 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 TMEM52BQ4KMG9 183 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 HIST2H2BCQ6DN03 193 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 ERAP2Q6P179 960 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 ZSWIM9Q86XI8 627 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 DTX1Q86Y01 620 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 CREG2Q8IUH2 290 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 KLHDC8BQ8IXV7 354 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 NDUFAF2Q8N183 169 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 FAM71DQ8N9W8 422 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 SPATA22Q8NHS9 363 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 CCDC110Q8TBZ0 833 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 PIH1D2Q8WWB5 315 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 TMEM159Q96B96 161 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 TRIB3Q96RU7 358 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 RBM15Q96T37 977 aaKnown RBP eCLIP8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 SEMA6CQ9H3T2 930 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 DPEP2Q9H4A9 486 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 SUDS3Q9H7L9 328 aaPredicted RBP8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 RDH14Q9HBH5 336 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 PCDH9Q9HC56 1237 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 LRIT1Q9P2V4 623 aa8.66□□□□□ -1.02
CLSTN3-212ENST00000541770 RSPH14Q9UHP6 348 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms