RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ACAP2Q15057 778 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 PARP15Q460N3 678 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ABRAXAS1Q6UWZ7 409 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 RBM23Q86U06 439 aaKnown RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 OR8H2Q8N162 312 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 FCRL3Q96P31 734 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 OSBPL11Q9BXB4 747 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 COQ10BQ9H8M1 238 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 EIF2B3Q9NR50 452 aaKnown RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ZNF490Q9ULM2 529 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 PDLIM1O00151 329 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 IFRD1O00458 451 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 RECQL5O94762 991 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ECT2LQ008S8 904 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 PCLAFQ15004 111 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 KIAA0408Q6ZU52 694 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 ADCY4Q8NFM4 1077 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 TMEM40Q8WWA1 233 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 IRGQQ8WZA9 623 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 FCRL5Q96RD9 977 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 MTIF3Q9H2K0 278 aaKnown RBP11.64□□□□□ -0.55
SYNPO-204ENST00000519664 RASSF1Q9NS23 344 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 DAPK2Q9UIK4 370 aa11.64□□□□□ -0.55
SYNPO-204ENST00000519664 MYO10Q9HD67 2058 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 MATN2O00339 956 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 IL1BP01584 269 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 MTHFD1P11586 935 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 ITGAXP20702 1163 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 POLR2JP52435 117 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 DLG1Q12959 904 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 LCP2Q13094 533 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 TLDC1Q6P9B6 456 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 RBFAQ8N0V3 343 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 CLDN19Q8N6F1 224 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 STYXQ8WUJ0 223 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 UNC93B1Q9H1C4 597 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 CNTN3Q9P232 1028 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 GALPQ9UBC7 116 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 SNX6Q9UNH7 406 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 EPORP19235 508 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 SLC18A1P54219 525 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 RPS7P62081 194 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 FNDC3BQ53EP0 1204 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 GPRIN1Q7Z2K8 1008 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 TRIM48Q8IWZ4 208 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 SFRP1Q8N474 314 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 ARFGAP1Q8N6T3 406 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 CNTD1Q8N815 330 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 ZBTB8BQ8NAP8 495 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 OR2T34Q8NGX1 318 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 OR2T3Q8NH03 318 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 COL26A1Q96A83 441 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 NTAN1Q96AB6 310 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 PYCR2Q96C36 320 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 SLC7A6OSQ96CW6 309 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 COQ7Q99807 217 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 TRIM8Q9BZR9 551 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 CLK4Q9HAZ1 481 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 PNPLA3Q9NST1 481 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 LRRC42Q9Y546 428 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 COPG1Q9Y678 874 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 LAMA4Q16363 1823 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 NEDD8-MDP1E9PL57 170 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 SEPT4O43236 478 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 EIF2S1P05198 315 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 DDX5P17844 614 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 MLLT6P55198 1093 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 MTPNP58546 118 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 ARPC4P59998 168 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 CRHR2Q13324 411 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 TTC23Q5W5X9 447 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 TAPT1Q6NXT6 567 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 UBE2R2Q712K3 238 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 C14orf80Q86SX3 495 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 HJURPQ8NCD3 748 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 DENND1AQ8TEH3 1009 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 AUTS2Q8WXX7 1259 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 REXO5Q96IC2 774 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 PLEKHG4BQ96PX9 1271 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 HIPK3Q9H422 1215 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 ADPRHL2Q9NX46 363 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 PTTG2Q9NZH5 202 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 DOLKQ9UPQ8 538 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 DMTF1Q9Y222 760 aa11.63□□□□□ -0.55
SYNPO-204ENST00000519664 SAMHD1Q9Y3Z3 626 aaKnown RBP11.63□□□□□ -0.55
SYNPO-204ENST00000519664 A8MT66 165 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 PLEKHG4Q58EX7 1191 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 MBLAC2Q68D91 279 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 KIAA0930Q6ICG6 404 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-204ENST00000519664 CANT1Q8WVQ1 401 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 MYO19Q96H55 970 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 IGFLR1Q9H665 355 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 SYNDIG1Q9H7V2 258 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 HS3ST4Q9Y661 456 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 AXIN1O15169 862 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 INSIG1O15503 277 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 SLC7A4O43246 635 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 MAGP20916 626 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 DEFA1P59665 94 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 DEFA3P59666 94 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms