RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	TDRD1	Q9BXT4	1180 aa	Known RBP	10.5	□□□□□ -0.73
HMGN1-215	ENST00000485550	PCDH9	Q9HC56	1237 aa		10.5	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZNHIT2	Q9UHR6	403 aa		10.5	□□□□□ -0.73
HMGN1-215	ENST00000485550	TUBD1	Q9UJT1	453 aa		10.5	□□□□□ -0.73
HMGN1-215	ENST00000485550	NENF	Q9UMX5	172 aa		10.5	□□□□□ -0.73
HMGN1-215	ENST00000485550	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	10.5	□□□□□ -0.73
HMGN1-215	ENST00000485550	SPEN	Q96T58	3664 aa	Known RBP	10.5	□□□□□ -0.73
HMGN1-215	ENST00000485550	IGHV5-10-1	A0A0J9YXX1	117 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	KCNK1	O00180	336 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	EML2	O95834	649 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	KRT7	P08729	469 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZNF30	P17039	623 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	KDELR1	P24390	212 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	TEAD1	P28347	426 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	CD86	P42081	329 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	ARSD	P51689	593 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	STC1	P52823	247 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	PYCR3	Q53H96	274 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	TMEM164	Q5U3C3	297 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	B4GALNT4	Q76KP1	1039 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	CHST15	Q7LFX5	561 aa	Predicted RBP	10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	LAPTM4B	Q86VI4	370 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	GALNT13	Q8IUC8	556 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	CCDC13	Q8IYE1	715 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	EXD1	Q8NHP7	514 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	IQCD	Q96DY2	449 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	SCARF2	Q96GP6	870 aa	Predicted RBP	10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	CCDC74B	Q96LY2	380 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	TSGA13	Q96PP4	275 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	WDR24	Q96S15	920 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	CEP41	Q9BYV8	373 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZMYND15	Q9H091	742 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	CDH19	Q9H159	772 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	DEF6	Q9H4E7	631 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	DTL	Q9NZJ0	730 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	AKAP7	Q9P0M2	348 aa	Predicted RBP	10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	TMEM9	Q9P0T7	183 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	UVRAG	Q9P2Y5	699 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	HEY1	Q9Y5J3	304 aa		10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	10.49	□□□□□ -0.73	1e-14	■■■□□ 15.4
HMGN1-215	ENST00000485550	OAS3	Q9Y6K5	1087 aa	Known RBP	10.49	□□□□□ -0.73
HMGN1-215	ENST00000485550	ABCA12	Q86UK0	2595 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	IGHV1OR21-1	A0A087WYE8	117 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	C1orf232	A0A0U1RR37	186 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	LRRD1	A4D1F6	860 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	DUX1	O43812	170 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	SNX2	O60749	519 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	PIRT	P0C851	137 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	PRKAR1A	P10644	381 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	TNNT1	P13805	278 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	MX2	P20592	715 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	CES1	P23141	567 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	UGT1A3	P35503	534 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	MLLT10	P55197	1068 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZBTB17	Q13105	803 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	GALNT3	Q14435	633 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	SLC18A3	Q16572	532 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	QPCT	Q16769	361 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	SNAP47	Q5SQN1	464 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZNF648	Q5T619	568 aa	Predicted RBP	10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	ALG1L	Q6GMV1	187 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	NPNT	Q6UXI9	565 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZNF765	Q7L2R6	523 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZNF438	Q7Z4V0	828 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	NRSN1	Q8IZ57	195 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	CNTD1	Q8N815	330 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	OR8K1	Q8NGG5	319 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	SLC35G2	Q8TBE7	412 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	FAF2	Q96CS3	445 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	COX14	Q96I36	57 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	RNF157	Q96PX1	679 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	MLPH	Q9BV36	600 aa	Predicted RBP	10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	ARFGAP3	Q9NP61	516 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	CNOT6	Q9ULM6	557 aa	Known RBP	10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	KCNK6	Q9Y257	313 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	C2CD3	Q4AC94	2353 aa		10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	ANKRD17	O75179	2603 aa	Known RBP	10.48	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZNF106	Q9H2Y7	1883 aa	Known RBP	10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZNF891	A8MT65	544 aa	Predicted RBP	10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550		A8MU76	341 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	FADS2P1	A8MWK0	482 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	ANKRD66	B4E2M5	251 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	NKX2-8	O15522	239 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	ZW10	O43264	779 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	MAP3K7	O43318	606 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	AKR1B10	O60218	316 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	DNAJC6	O75061	913 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	AGFG2	O95081	481 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	SLC4A1	P02730	911 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	TPM3	P06753	285 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	MMP2	P08253	660 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	TMEM253	P0C7T8	217 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	FGF3	P11487	239 aa	Predicted RBP	10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	ACP5	P13686	325 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	NR1D1	P20393	614 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	CA4	P22748	312 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	HNRNPH3	P31942	346 aa	Known RBP	10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	GPR3	P46089	330 aa		10.47	□□□□□ -0.73
HMGN1-215	ENST00000485550	UQCRFS1	P47985	274 aa		10.47	□□□□□ -0.73

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