RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CILP2Q8IUL8 1156 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 FAM156AQ8NDB6 213 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 ZNF570Q96NI8 536 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 APOL4Q9BPW4 351 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 CLK4Q9HAZ1 481 aaKnown RBP14.54□□□□□ -0.08
HDAC6-220ENST00000477528 POLR3BQ9NW08 1133 aaPredicted RBP14.54□□□□□ -0.08
HDAC6-220ENST00000477528 SQORQ9Y6N5 450 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 ABCB1P08183 1280 aaPredicted RBP14.54□□□□□ -0.08
HDAC6-220ENST00000477528 ANXA11P50995 505 aaKnown RBP14.54□□□□□ -0.08
HDAC6-220ENST00000477528 THOP1P52888 689 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 ARMC3Q5W041 872 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 GPR180Q86V85 440 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 OR52E6Q96RD3 313 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 PAAF1Q9BRP4 392 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 R3HDMLQ9H3Y0 253 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 HECAQ9UBI9 543 aaPredicted RBP14.54□□□□□ -0.08
HDAC6-220ENST00000477528 TMCC3Q9ULS5 477 aa14.54□□□□□ -0.08
HDAC6-220ENST00000477528 FCF1Q9Y324 198 aaKnown RBP14.54□□□□□ -0.08
HDAC6-220ENST00000477528 TMEM233B4DJY2 109 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 SULT2A1Q06520 285 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 ADGRF1Q5T601 910 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 PAQR3Q6TCH7 311 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 RBM44Q6ZP01 1051 aaKnown RBP14.53□□□□□ -0.08
HDAC6-220ENST00000477528 UBE2R2Q712K3 238 aaPredicted RBP14.53□□□□□ -0.08
HDAC6-220ENST00000477528 C11orf96Q7Z7L8 435 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 TP53INP2Q8IXH6 220 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 UMODL1-AS1Q8N2C9 162 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 FIBCD1Q8N539 461 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 MEIS3P2A8K0S8 358 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 ARVCFO00192 962 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 WDR47O94967 919 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 CHRNA1P02708 482 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 RRM2P31350 389 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 ATP6V1E1P36543 226 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 DNAJB13P59910 316 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 LIN52Q52LA3 116 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 SERPINA9Q86WD7 417 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 TCAIMQ8N3R3 496 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 TTC30BQ8N4P2 665 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 EPS8L2Q9H6S3 715 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 MTMR10Q9NXD2 777 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 GRM6O15303 877 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 STK16O75716 305 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 OR4F21O95013 312 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 SPATA31D3P0C874 917 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 GPC1P35052 558 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 KCNQ1P51787 676 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 SERINC3Q13530 473 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 FBXL19Q6PCT2 694 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 SPATA31D4Q6ZUB0 917 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 SLC44A2Q8IWA5 706 aaPredicted RBP14.53□□□□□ -0.08
HDAC6-220ENST00000477528 OR2T12Q8NG77 320 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 DGCR14Q96DF8 476 aaKnown RBP14.53□□□□□ -0.08
HDAC6-220ENST00000477528 TMEM175Q9BSA9 504 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 EIF2B4Q9UI10 523 aaKnown RBP14.53□□□□□ -0.08
HDAC6-220ENST00000477528 MAFKO60675 156 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 LIPEQ05469 1076 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 TRAP1Q12931 704 aaKnown RBP14.53□□□□□ -0.08
HDAC6-220ENST00000477528 TRAPPC5Q8IUR0 188 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 MS4A4AQ96JQ5 239 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 IL12RB2Q99665 862 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 ZBTB26Q9HCK0 441 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.53□□□□□ -0.08
HDAC6-220ENST00000477528 TPRKBQ9Y3C4 175 aa14.53□□□□□ -0.08
HDAC6-220ENST00000477528 PRAMEF11O60813 436 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 KERAO60938 352 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 EPOP01588 193 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 GPIP06744 558 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 IL23RQ5VWK5 629 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 TPGS2Q68CL5 300 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 BEND5Q7L4P6 421 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 DSG4Q86SJ6 1040 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 IMP4Q96G21 291 aaKnown RBP14.52□□□□□ -0.08
HDAC6-220ENST00000477528 ITCHQ96J02 903 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 TPD52L3Q96J77 140 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 DCUN1D5Q9BTE7 237 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 ZNF490Q9ULM2 529 aaPredicted RBP14.52□□□□□ -0.08
HDAC6-220ENST00000477528 CPQQ9Y646 472 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 PHIPQ8WWQ0 1821 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 LOXHD1Q8IVV2 1947 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 MTMR11A4FU01 709 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 HAPLN1P10915 354 aaPredicted RBP14.52□□□□□ -0.08
HDAC6-220ENST00000477528 GTF2H2Q13888 395 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 SLC5A9Q2M3M2 681 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 PM20D1Q6GTS8 502 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 GTF2H2CQ6P1K8 395 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 BBS7Q8IWZ6 715 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 TMEM199Q8N511 208 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 DCBLD1Q8N8Z6 715 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 ASB9Q96DX5 294 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 ALG2Q9H553 416 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 LRTM1Q9HBL6 345 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 ZNF229Q9UJW7 825 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 C3orf18Q9UK00 162 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 RPS6KA6Q9UK32 745 aa14.52□□□□□ -0.08
HDAC6-220ENST00000477528 A0A1W2PQ67 120 aa14.52□□□□□ -0.09
HDAC6-220ENST00000477528 BCL10O95999 233 aa14.52□□□□□ -0.09
HDAC6-220ENST00000477528 APOA1P02647 267 aa14.52□□□□□ -0.09
HDAC6-220ENST00000477528 XRCC1P18887 633 aaPredicted RBP14.52□□□□□ -0.09
HDAC6-220ENST00000477528 GRK3P35626 688 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms