RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 DTD2Q96FN9 168 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 ATXN7L3BQ96GX2 97 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 C16orf45Q96MC5 204 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-205ENST00000465238 APOOQ9BUR5 198 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 TRABDQ9H4I3 376 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 ETNK1Q9HBU6 452 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 RAB6BQ9NRW1 208 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.62■□□□□ 0.41
COL7A1-205ENST00000465238 PKD2L2Q9NZM6 624 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 PADI4Q9UM07 663 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 SATB2Q9UPW6 733 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 PCDHGA8Q9Y5G5 932 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 ENTPD2Q9Y5L3 495 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 LRP4O75096 1905 aa17.62■□□□□ 0.41
COL7A1-205ENST00000465238 CFAP46Q8IYW2 2715 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 ERI2A8K979 691 aaKnown RBP17.61■□□□□ 0.41
COL7A1-205ENST00000465238 FANCGO15287 622 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 RBMS1P29558 406 aaKnown RBP17.61■□□□□ 0.41
COL7A1-205ENST00000465238 CXADRP78310 365 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 MTM1Q13496 603 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 INPP5AQ14642 412 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 KIF26BQ2KJY2 2108 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 ALG11Q2TAA5 492 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 KCTD11Q693B1 232 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 NYAP1Q6ZVC0 841 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 TMC3Q7Z5M5 1100 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 KLHDC8BQ8IXV7 354 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 NRSN1Q8IZ57 195 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 ARL10Q8N8L6 244 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 BLOC1S5Q8TDH9 187 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 GRK7Q8WTQ7 553 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 KCNE4Q8WWG9 221 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 TSACCQ96A04 125 aaPredicted RBP17.61■□□□□ 0.41
COL7A1-205ENST00000465238 NAF1Q96HR8 494 aaKnown RBP17.61■□□□□ 0.41
COL7A1-205ENST00000465238 CCDC3Q9BQI4 270 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 DPH1Q9BZG8 443 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 SPO11Q9Y5K1 396 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 ATMQ13315 3056 aa17.61■□□□□ 0.41
COL7A1-205ENST00000465238 RGSL1A5PLK6 1076 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 AP2A1O95782 977 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 KRT14P02533 472 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 SLC4A1P02730 911 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 CELA2BP08218 269 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-205ENST00000465238 FNTAP49354 379 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 TMPRSS3P57727 454 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 SRP54P61011 504 aaKnown RBP17.6■□□□□ 0.41
COL7A1-205ENST00000465238 OLIG2Q13516 323 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 SPIDRQ14159 915 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 PNCKQ6P2M8 343 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 ENPP7Q6UWV6 458 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 ZNF765Q7L2R6 523 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 LINC00523Q86TU6 105 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 GKN2Q86XP6 184 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 PLA2G15Q8NCC3 412 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 AP2M1Q96CW1 435 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 WDR92Q96MX6 357 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 SLC46A1Q96NT5 459 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 ABCG8Q9H221 673 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 RAD18Q9NS91 495 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 GULP1Q9UBP9 304 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 KLQ9UEF7 1012 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 CD84Q9UIB8 345 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 OR1A2Q9Y585 309 aa17.6■□□□□ 0.41
COL7A1-205ENST00000465238 A0A1W2PNU3 283 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-205ENST00000465238 GAS8O95995 478 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 TUBB4AP04350 444 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 MLLT3P42568 568 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-205ENST00000465238 GPR1P46091 355 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 SPINT3P49223 89 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 DPTQ07507 201 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 C19orf57Q0VDD7 668 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 SEMA5AQ13591 1074 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 TRIP13Q15645 432 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-205ENST00000465238 RAET1GQ6H3X3 334 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 RFLNAQ6ZTI6 216 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 RD3Q7Z3Z2 195 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 GLT6D1Q7Z4J2 308 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 NLRP8Q86W28 1048 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 WDR36Q8NI36 951 aaKnown RBP17.59■□□□□ 0.41
COL7A1-205ENST00000465238 SCAMP4Q969E2 229 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 FAM83DQ9H4H8 585 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 ARNT2Q9HBZ2 717 aa17.59■□□□□ 0.41
COL7A1-205ENST00000465238 CACNB4O00305 520 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-205ENST00000465238 NTN3O00634 580 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-205ENST00000465238 AURKAO14965 403 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 KLK10O43240 276 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 ECEL1O95672 775 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 TNFP01375 233 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 PYGLP06737 847 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 APRTP07741 180 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 BASP1P80723 227 aaKnown RBP17.58■□□□□ 0.4
COL7A1-205ENST00000465238 DENND5AQ6IQ26 1287 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 PPP1R21Q6ZMI0 780 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 ARL14Q8N4G2 192 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 KYQ8NBH2 561 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 OR6C4Q8NGE1 309 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 EID2BQ96D98 161 aa17.58■□□□□ 0.4
COL7A1-205ENST00000465238 CCDC97Q96F63 343 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-205ENST00000465238 PRR11Q96HE9 360 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-205ENST00000465238 RIOK2Q9BVS4 552 aaKnown RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms