RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PTRH1Q86Y79 214 aaKnown RBP11.45□□□□□ -0.58
USP4-204ENST00000416417 MAP7D3Q8IWC1 876 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 BMPERQ8N8U9 685 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 SPATA22Q8NHS9 363 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 SPATA16Q9BXB7 569 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 OSGEPL1Q9H4B0 414 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 STARD5Q9NSY2 213 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 SPTLC3Q9NUV7 552 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 PKD2L2Q9NZM6 624 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 UVRAGQ9P2Y5 699 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 SLC23A2Q9UGH3 650 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 PCDHGA3Q9Y5H0 932 aa11.45□□□□□ -0.58
USP4-204ENST00000416417 AHCTF1Q8WYP5 2266 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 A6NCN8 305 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 AURKAO14965 403 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 NKX2-8O15522 239 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 WISP1O95388 367 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 PYGLP06737 847 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 PRKAR1AP10644 381 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 TYRP1P17643 537 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 MX2P20592 715 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 NOP2P46087 812 aaKnown RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 GFERP55789 205 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 RPL26P61254 145 aaKnown RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 GPLD1P80108 840 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 KCNC4Q03721 635 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 PPIDQ08752 370 aaKnown RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 PEX6Q13608 980 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 LRP8Q14114 963 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 SEPT7Q16181 437 aaKnown RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 SLC18A3Q16572 532 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 CLPPQ16740 277 aaPredicted RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 ASTE1Q2TB18 679 aaPredicted RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 COLEC12Q5KU26 742 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 DCAF12Q5T6F0 453 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 TIPARPQ7Z3E1 657 aaKnown RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 ADGRG6Q86SQ4 1221 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 SLC35G2Q8TBE7 412 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 CCHCR1Q8TD31 782 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 FATE1Q969F0 183 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 RNF25Q96BH1 459 aaPredicted RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 TRIB3Q96RU7 358 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 LYSMD1Q96S90 227 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 CHP1Q99653 195 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 CLMPQ9H6B4 373 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 BPIFA1Q9NP55 256 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 KLC4Q9NSK0 619 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 UBP1Q9NZI7 540 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 VPS18Q9P253 973 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 TRIM10Q9UDY6 481 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 AMACRQ9UHK6 382 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 DNPEPQ9ULA0 475 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 RPL26L1Q9UNX3 145 aaKnown RBP11.44□□□□□ -0.58
USP4-204ENST00000416417 DNAJC16Q9Y2G8 782 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 SPO11Q9Y5K1 396 aa11.44□□□□□ -0.58
USP4-204ENST00000416417 FLNBO75369 2602 aaKnown RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 LOC101059948A0A1B0GTJ6 334 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 NUAK1O60285 661 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 SLC25A14O95258 325 aaPredicted RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 MT-CYBP00156 380 aaPredicted RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 KRT1P04264 644 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 TMEM253P0C7T8 217 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 IFI35P80217 286 aaPredicted RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 KHDC1Q4VXA5 237 aaKnown RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 ATP1A1-AS1Q5TC04 95 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 ARHGAP22Q7Z5H3 698 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 SLC9B2Q86UD5 537 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 RFX6Q8HWS3 928 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 CCDC112Q8NEF3 446 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 RTP4Q96DX8 246 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 ZNF830Q96NB3 372 aaPredicted RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 PLEKHG4BQ96PX9 1271 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 DDA1Q9BW61 102 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 ADGRE3Q9BY15 652 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 DEF6Q9H4E7 631 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 ZFYVE1Q9HBF4 777 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 SARS2Q9NP81 518 aaKnown RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 PDP2Q9P2J9 529 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 SAE1Q9UBE0 346 aaPredicted RBP11.43□□□□□ -0.58
USP4-204ENST00000416417 CPNE7Q9UBL6 633 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 PILRAQ9UKJ1 303 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 ZNF711Q9Y462 761 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 ADGRG1Q9Y653 693 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 SLC30A1Q9Y6M5 507 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 COL6A6A6NMZ7 2263 aa11.43□□□□□ -0.58
USP4-204ENST00000416417 B4E171 279 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 APOL1O14791 398 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 AKR1B10O60218 316 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 PMPCBO75439 489 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 F3P13726 295 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 HNRNPH3P31942 346 aaKnown RBP11.42□□□□□ -0.58
USP4-204ENST00000416417 TSPAN7P41732 249 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 MC2RQ01718 297 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 ZNF569Q5MCW4 686 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 SLC9A4Q6AI14 798 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 WDR74Q6RFH5 385 aaPredicted RBP11.42□□□□□ -0.58
USP4-204ENST00000416417 TMC3Q7Z5M5 1100 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 NT5DC3Q86UY8 548 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 IMP4Q96G21 291 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms