RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 KYAT3Q6YP21 454 aaKnown RBP6.6□□□□□ -1.35
VPS41-204ENST00000413141 ZNF852Q6ZMS4 543 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 Q6ZS52 159 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 Q6ZVL8 140 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 ZNF765Q7L2R6 523 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 CYP2U1Q7Z449 544 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 TECPR1Q7Z6L1 1165 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 PIM3Q86V86 326 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 LCA5Q86VQ0 697 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 NRSN1Q8IZ57 195 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 CENPLQ8N0S6 344 aaPredicted RBP6.6□□□□□ -1.35
VPS41-204ENST00000413141 RBFAQ8N0V3 343 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 ZNF687Q8N1G0 1237 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 PLD6Q8N2A8 252 aaKnown RBP6.6□□□□□ -1.35
VPS41-204ENST00000413141 TRAM1L1Q8N609 369 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 EFCAB3Q8N7B9 438 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 GDAP1Q8TB36 358 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 ZNF398Q8TD17 642 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 CXorf40AQ8TE69 158 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 DYDC1Q8WWB3 177 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 KCNJ9Q92806 393 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 SCAMP4Q969E2 229 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 ULK4Q96C45 1275 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 NUS1Q96E22 293 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 DTD2Q96FN9 168 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 TTC1Q99614 292 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 ZSCAN5AQ9BUG6 496 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 RIOK2Q9BVS4 552 aaKnown RBP6.6□□□□□ -1.35
VPS41-204ENST00000413141 BOCQ9BWV1 1114 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 SPATA16Q9BXB7 569 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 C1QTNF1Q9BXJ1 281 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 SLC6A17Q9H1V8 727 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 CCDC68Q9H2F9 335 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 FAM83DQ9H4H8 585 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 CCDC134Q9H6E4 229 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 POPDC3Q9HBV1 291 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 GPAMQ9HCL2 828 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 PSD3Q9NYI0 1048 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 THEGQ9P2T0 379 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 GNPTGQ9UJJ9 305 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 TLK1Q9UKI8 766 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 TMPRSS11EQ9UL52 423 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 EMCNQ9ULC0 261 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 CA14Q9ULX7 337 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 MMP17Q9ULZ9 603 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 NDRG2Q9UN36 371 aaKnown RBP6.6□□□□□ -1.35
VPS41-204ENST00000413141 SORCS3Q9UPU3 1222 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 MED16Q9Y2X0 877 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 VWA7Q9Y334 891 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 PLLPQ9Y342 182 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 MTF2Q9Y483 593 aaPredicted RBP6.6□□□□□ -1.35
VPS41-204ENST00000413141 COMMD10Q9Y6G5 202 aa6.6□□□□□ -1.35
VPS41-204ENST00000413141 PRUNE2Q8WUY3 3088 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 LRRK1Q38SD2 2015 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TCRBV21S2A2A0A5A6 115 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 FADS2P1A8MWK0 482 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TSPAN6O43657 245 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 PLRG1O43660 514 aaKnown RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 PLIN3O60664 434 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 MMP20O60882 483 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 NIPSNAP2O75323 286 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 VPS26AO75436 327 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 RNASEH2AO75792 299 aaKnown RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 RECQL5O94762 991 aaPredicted RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 RHOBTB1O94844 696 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 SOD1P00441 154 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 DNTTP04053 509 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 PROCP04070 461 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 CHRNB1P11230 501 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 COL6A2P12110 1019 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 PKMP14618 531 aaKnown RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 ZNF37AP17032 561 aaPredicted RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 NDUFV2P19404 249 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 CD9P21926 228 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TARSP26639 723 aaKnown RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 SLC26A3P40879 764 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 SERPINB4P48594 390 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 ADPRHP54922 357 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 B4GALNT1Q00973 533 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 CREB5Q02930 508 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 ZBTB16Q05516 673 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 GABPB1Q06547 395 aaPredicted RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 CCDC15Q0P6D6 951 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 DLG1Q12959 904 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 SEPT7Q16181 437 aaKnown RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 PDK4Q16654 411 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TSNAXIP1Q2TAA8 658 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 CCDC153Q494R4 210 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TTC31Q49AM3 519 aaPredicted RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 GPRC6AQ5T6X5 926 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 HHATQ5VTY9 493 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 C16orf46Q6P387 395 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TMEM207Q6UWW9 146 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TMEM92Q6UXU6 159 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 CCDC91Q7Z6B0 441 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TBC1D1Q86TI0 1168 aaPredicted RBP6.59□□□□□ -1.35
VPS41-204ENST00000413141 TAX1BP1Q86VP1 789 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 TMPRSS6Q8IU80 811 aa6.59□□□□□ -1.35
VPS41-204ENST00000413141 HDDC3Q8N4P3 179 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms