RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 SPATA16Q9BXB7 569 aa16.42■□□□□ 0.22
PTPRK-208ENST00000392449 MAK16Q9BXY0 300 aaKnown RBP16.42■□□□□ 0.22
PTPRK-208ENST00000392449 ADGRE3Q9BY15 652 aa16.42■□□□□ 0.22
PTPRK-208ENST00000392449 OR2AG1Q9H205 316 aa16.42■□□□□ 0.22
PTPRK-208ENST00000392449 AKAP7Q9P0M2 348 aaPredicted RBP16.42■□□□□ 0.22
PTPRK-208ENST00000392449 PCDHGA4Q9Y5G9 962 aa16.42■□□□□ 0.22
PTPRK-208ENST00000392449 A6NCN8 305 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 F5H423 210 aaPredicted RBP16.41■□□□□ 0.22
PTPRK-208ENST00000392449 AURKAO14965 403 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 MTX2O75431 263 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 MTA2O94776 668 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 COMTP21964 271 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 MAPK9P45984 424 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 HHEXQ03014 270 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 PEX6Q13608 980 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 PDK1Q15118 436 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 NOMO1Q15155 1222 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 CRTC3Q6UUV7 619 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 NT5DC3Q86UY8 548 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 FAM129CQ86XR2 697 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 SGF29Q96ES7 293 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 AHCYL2Q96HN2 611 aaKnown RBP16.41■□□□□ 0.22
PTPRK-208ENST00000392449 ZFYVE1Q9HBF4 777 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 PRDM8Q9NQV8 689 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 TFR2Q9UP52 801 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 ZNF711Q9Y462 761 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 SPO11Q9Y5K1 396 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 B3GALT1Q9Y5Z6 326 aa16.41■□□□□ 0.22
PTPRK-208ENST00000392449 EFCAB7A8K855 629 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 ZNF487B1APH4 448 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 ZW10O43264 779 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 GRID2O43424 1007 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 PECAM1P16284 738 aaPredicted RBP16.4■□□□□ 0.22
PTPRK-208ENST00000392449 ARHGAP25P42331 645 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 ADCY2Q08462 1091 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 IYDQ6PHW0 289 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 RHOT2Q8IXI1 618 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 AGBL5Q8NDL9 886 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 HTR3CQ8WXA8 447 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 TADA1Q96BN2 335 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 RNF31Q96EP0 1072 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 MED8Q96G25 268 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 SLC25A51Q9H1U9 297 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 TSPY26PQ9H489 355 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 SLC23A2Q9UGH3 650 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 ADGRG1Q9Y653 693 aa16.4■□□□□ 0.22
PTPRK-208ENST00000392449 BSNQ9UPA5 3926 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 PPP1R12AO14974 1030 aaPredicted RBP16.39■□□□□ 0.21
PTPRK-208ENST00000392449 NUAK1O60285 661 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 PMPCBO75439 489 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 TPM1P09493 284 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 PTPN3P26045 913 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 CSTF2P33240 577 aaKnown RBP eCLIP16.39■□□□□ 0.213e-7■■■□□ 17.7
PTPRK-208ENST00000392449 GPLD1P80108 840 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 CDK18Q07002 472 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 SQSTM1Q13501 440 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 CLPPQ16740 277 aaPredicted RBP16.39■□□□□ 0.21
PTPRK-208ENST00000392449 KHDC1Q4VXA5 237 aaKnown RBP16.39■□□□□ 0.21
PTPRK-208ENST00000392449 ZNF569Q5MCW4 686 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 TMEM164Q5U3C3 297 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 KAZNQ674X7 775 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 ANKS6Q68DC2 871 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 TMEM71Q6P5X7 295 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 TMC3Q7Z5M5 1100 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 RHOT1Q8IXI2 618 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 RAVER1Q8IY67 606 aaKnown RBP16.39■□□□□ 0.21
PTPRK-208ENST00000392449 OR10G6Q8NH81 332 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 NCSTNQ92542 709 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 TAAR9Q96RI9 348 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 CTRCQ99895 268 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 TBC1D10AQ9BXI6 508 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 OSGEPL1Q9H4B0 414 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 GLOD4Q9HC38 313 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 BPIFA1Q9NP55 256 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 KLC4Q9NSK0 619 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 SLC39A1Q9NY26 324 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 SCHIP1Q9P0W5 487 aaPredicted RBP16.39■□□□□ 0.21
PTPRK-208ENST00000392449 KLHL3Q9UH77 587 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 PCDHB11Q9Y5F2 797 aa16.39■□□□□ 0.21
PTPRK-208ENST00000392449 STMND1H3BQB6 276 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 SPOPO43791 374 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 DUX1O43812 170 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 SLC25A14O95258 325 aaPredicted RBP16.38■□□□□ 0.21
PTPRK-208ENST00000392449 FAM87AP0C7U9 286 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 BPIP17213 487 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 CD68P34810 354 aaPredicted RBP16.38■□□□□ 0.21
PTPRK-208ENST00000392449 CDKN2BP42772 138 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 MARCKSL1P49006 195 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 TRA2AQ13595 282 aaKnown RBP eCLIP16.38■□□□□ 0.215e-6■■■■□ 22.5
PTPRK-208ENST00000392449 PRKD1Q15139 912 aaPredicted RBP16.38■□□□□ 0.21
PTPRK-208ENST00000392449 SEPT7Q16181 437 aaKnown RBP16.38■□□□□ 0.21
PTPRK-208ENST00000392449 LRRC38Q5VT99 294 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 ADGRG6Q86SQ4 1221 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 VSIG1Q86XK7 387 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 BMPERQ8N8U9 685 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 NKD1Q969G9 470 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 HAUS1Q96CS2 278 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 GPR63Q9BZJ6 419 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 CARD9Q9H257 536 aa16.38■□□□□ 0.21
PTPRK-208ENST00000392449 MAGEE1Q9HCI5 957 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms