RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 MAVSQ7Z434 540 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ZSWIM9Q86XI8 627 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 CHST14Q8NCH0 376 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 FRS2Q8WU20 508 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 RTKNQ9BST9 563 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 TRMT61BQ9BVS5 477 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ZDHHC6Q9H6R6 413 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 COG4Q9H9E3 785 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ELOVL2Q9NXB9 296 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 TRIOO75962 3097 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 A0A1W2PQ67 120 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 HTRA2O43464 458 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 COX4I1P13073 169 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 SOX9P48436 509 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 CDC16Q13042 620 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 CUL3Q13618 768 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 EIF4HQ15056 248 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 LCA5Q86VQ0 697 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 DEFB107AQ8IZN7 70 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 FBXW8Q8N3Y1 598 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 PNPLA1Q8N8W4 532 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 MDGA1Q8NFP4 955 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 OR13J1Q8NGT2 312 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 RDH11Q8TC12 318 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 HDAC10Q969S8 669 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 KLHL4Q9C0H6 718 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 ILKAPQ9H0C8 392 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 PAPOLBQ9NRJ5 636 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 EPS15L1Q9UBC2 864 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 ANKRD6Q9Y2G4 727 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 SCN8AQ9UQD0 1980 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 ANHXE9PGG2 379 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 RPP40O75818 363 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 THRAP10827 490 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 LPOP22079 712 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 ARSDP51689 593 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 RNF220Q5VTB9 566 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 ZNF470Q6ECI4 717 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 KIAA0408Q6ZU52 694 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 NUDT18Q6ZVK8 323 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 CMC1Q7Z7K0 106 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 CNTN4Q8IWV2 1026 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 SPDYE1Q8NFV5 336 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 OR2A12Q8NGT7 310 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 PIP4K2CQ8TBX8 421 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 ZNF641Q96N77 438 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 SERPINI1Q99574 410 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 MFSD1Q9H3U5 465 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 NMRAL1Q9HBL8 299 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 MAGEE1Q9HCI5 957 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 FBRSL1Q9HCM7 1045 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 ZDHHC4Q9NPG8 344 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 BCAP29Q9UHQ4 241 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 TLK1Q9UKI8 766 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 HCN2Q9UL51 889 aa13.09□□□□□ -0.31
SQSTM1-201ENST00000360718 MYO10Q9HD67 2058 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 LOC100653049A0A140TA62 436 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 C2CD4DB7Z1M9 353 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 DCXO43602 365 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 KRT34O76011 436 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 SLC4A1P02730 911 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 UBTFL6P0CB48 400 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ITGAXP20702 1163 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ACVR1Q04771 509 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 TBL3Q12788 808 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 KLF10Q13118 480 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ITPRIPL2Q3MIP1 535 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 VWA5B1Q5TIE3 1220 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 PTAR1Q7Z6K3 402 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 PDSS2Q86YH6 399 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 PIH1D2Q8WWB5 315 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 PYDC1Q8WXC3 89 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 DNAJC1Q96KC8 554 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 TBATAQ96M53 351 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 GPR63Q9BZJ6 419 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 SUV39H2Q9H5I1 410 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 NLE1Q9NVX2 485 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ZNF358Q9NW07 568 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 POMPQ9Y244 141 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 F5P12259 2224 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ZNF106Q9H2Y7 1883 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ATG2BQ96BY7 2078 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 COL6A3P12111 3177 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 TBC1D3BA6NDS4 549 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 G3V2L1 256 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 STX7O15400 261 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 C2P06681 752 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ALPIP09923 528 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 CTPS1P17812 591 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ERFP50548 548 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ZNF140P52738 457 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 POLR2LP62875 67 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 CTBP1Q13363 440 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 MED21Q13503 144 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 CCNIQ14094 377 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 AAK1Q2M2I8 961 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 MRNIPQ6NTE8 343 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 C16orf89Q6UX73 402 aa13.08□□□□□ -0.32
SQSTM1-201ENST00000360718 ACAD11Q709F0 780 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms