RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 BCAP29Q9UHQ4 241 aa16.52■□□□□ 0.23
VPS54-201ENST00000272322 CNOT6Q9ULM6 557 aaKnown RBP16.52■□□□□ 0.23
VPS54-201ENST00000272322 A0A1W2PQ45 241 aaPredicted RBP16.51■□□□□ 0.23
VPS54-201ENST00000272322 A0A1W2PQY0 241 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 SH3BGRLO75368 114 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 SEC24AO95486 1093 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 PRLP01236 227 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 GALTP07902 379 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 ALDH7A1P49419 539 aaKnown RBP16.51■□□□□ 0.23
VPS54-201ENST00000272322 SATB1Q01826 763 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 SREBF2Q12772 1141 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 CYP51A1Q16850 503 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 ZIK1Q3SY52 487 aaPredicted RBP16.51■□□□□ 0.23
VPS54-201ENST00000272322 ATOH8Q96SQ7 321 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 ZFP14Q9HCL3 533 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 MIA3Q5JRA6 1907 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 KNL1Q8NG31 2342 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 EOMESO95936 686 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 GPX3P22352 226 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 CA5AP35218 305 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 TRAF2Q12933 501 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 GPR17Q13304 367 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 MBOAT1Q6ZNC8 495 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 FRA10AC1Q70Z53 315 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 LRRC49Q8IUZ0 686 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 SLC15A3Q8IY34 581 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 FAM47BQ8NA70 645 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 ST13P5Q8NFI4 369 aaPredicted RBP16.51■□□□□ 0.23
VPS54-201ENST00000272322 EGFL8Q99944 293 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 UPF3AQ9H1J1 476 aaKnown RBP16.51■□□□□ 0.23
VPS54-201ENST00000272322 OCEL1Q9H607 264 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 SQORQ9Y6N5 450 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 PRSS51A0A1B0GVH4 220 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 A0A1W2PQ67 120 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 SYNCRIPO60506 623 aaKnown RBP16.51■□□□□ 0.23
VPS54-201ENST00000272322 TBL1XO60907 577 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 FAM58BPP0C7Q3 252 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 SETMARQ53H47 684 aaPredicted RBP16.51■□□□□ 0.23
VPS54-201ENST00000272322 TXNDC8Q6A555 127 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 GALNT15Q8N3T1 639 aa16.51■□□□□ 0.23
VPS54-201ENST00000272322 FAM155AB1AL88 458 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 AHCYL1O43865 530 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 RTN3O95197 1032 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 MBL2P11226 248 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 LBPP18428 481 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 YAP1P46937 504 aaKnown RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 HK2P52789 917 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 HK3P52790 923 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 MAPRE2Q15555 327 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 HMBOX1Q6NT76 420 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 SLC2A7Q6PXP3 512 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 IL27RAQ6UWB1 636 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 LYSMD3Q7Z3D4 306 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 ZNF786Q8N393 782 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 PCYOX1LQ8NBM8 494 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 METTL6Q8TCB7 284 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 WFDC5Q8TCV5 224 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 FUBP1Q96AE4 644 aaKnown RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 CCT7Q99832 543 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 SMG9Q9H0W8 520 aaKnown RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 HACD3Q9P035 362 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 ZNF225Q9UK10 706 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 CASQ2O14958 399 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 MTPNP58546 118 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 RHOAP61586 193 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 IRX1P78414 480 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 RHDQ02161 417 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 PLCL1Q15111 1095 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 CHSY3Q70JA7 882 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 CMTM6Q9NX76 183 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 ANKRD66B4E2M5 251 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 FOXD2O60548 495 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 TMCC1O94876 653 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 SMIM18P0DKX4 95 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 ZNF26P17031 533 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 SMAD3P84022 425 aaKnown RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 IKBKEQ14164 716 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 MYLK3Q32MK0 819 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 SAMD4BQ5PRF9 694 aaKnown RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 HECTD3Q5T447 861 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 ZFP1Q6P2D0 407 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 BEND5Q7L4P6 421 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 GPSM1Q86YR5 675 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 TEX26Q8N6G2 289 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 ARL14EPQ8N8R7 260 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 OR2T11Q8NH01 316 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 FEM1CQ96JP0 617 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 FAR2Q96K12 515 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 ZDHHC7Q9NXF8 308 aa16.5■□□□□ 0.23
VPS54-201ENST00000272322 MAGED1Q9Y5V3 778 aaPredicted RBP16.5■□□□□ 0.23
VPS54-201ENST00000272322 IGLV3-10A0A075B6K4 115 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 WASH4PA8MWX3 477 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 UPK3BL1B0FP48 263 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 UPK3BL2E5RIL1 263 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 SMAD6O43541 496 aaKnown RBP16.49■□□□□ 0.23
VPS54-201ENST00000272322 HSPA7P48741 367 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.49■□□□□ 0.232e-7■□□□□ 10
VPS54-201ENST00000272322 SCML4Q8N228 414 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 ZFP28Q8NHY6 868 aa16.49■□□□□ 0.23
VPS54-201ENST00000272322 RANBP9Q96S59 729 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms