RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SETMARQ53H47 684 aaPredicted RBP19.98■□□□□ 0.79
CLN3-250ENST00000636839 CTSL3PQ5NE16 218 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 PIP5KL1Q5T9C9 394 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 PELI3Q8N2H9 469 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 CLDN19Q8N6F1 224 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 ANKRD49Q8WVL7 239 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 AARSD1Q9BTE6 412 aaKnown RBP19.98■□□□□ 0.79
CLN3-250ENST00000636839 DYRK4Q9NR20 520 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 TLK1Q9UKI8 766 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 FAM50BQ9Y247 325 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 PRSS21Q9Y6M0 314 aa19.98■□□□□ 0.79
CLN3-250ENST00000636839 C1QTNF3-AMACRE9PGA6 284 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 DHRS4L1P0CG22 281 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 ITGALP20701 1170 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 TTPAP49638 278 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 ACOX1Q15067 660 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.97■□□□□ 0.79
CLN3-250ENST00000636839 TECPR1Q7Z6L1 1165 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 RPLP0P6Q8NHW5 317 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 CKAP2Q8WWK9 683 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 NXNL1Q96CM4 212 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 PPP1R16AQ96I34 528 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 TCF12Q99081 682 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 RIOK2Q9BVS4 552 aaKnown RBP19.97■□□□□ 0.79
CLN3-250ENST00000636839 MBD1Q9UIS9 605 aaPredicted RBP19.97■□□□□ 0.79
CLN3-250ENST00000636839 CKAP5Q14008 2032 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 TRBV5-4A0A0C4DH59 114 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 A0A1W2PP55 124 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 NIPSNAP2O75323 286 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 SLC12A2P55011 1212 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 TAS2R38P59533 333 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 RPS14P62263 151 aaKnown RBP19.97■□□□□ 0.79
CLN3-250ENST00000636839 PFKPQ01813 784 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 SLC30A3Q99726 388 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 SPATA16Q9BXB7 569 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 FAM107BQ9H098 131 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 FAM83DQ9H4H8 585 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 SLC2A4RGQ9NR83 387 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 PKD2L2Q9NZM6 624 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 DCDC2Q9UHG0 476 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 CRLS1Q9UJA2 301 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 CA14Q9ULX7 337 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 ACOT9Q9Y305 439 aa19.97■□□□□ 0.79
CLN3-250ENST00000636839 NEMP1O14524 444 aa19.96■□□□□ 0.79
CLN3-250ENST00000636839 HOXB2P14652 356 aa19.96■□□□□ 0.79
CLN3-250ENST00000636839 FDXRP22570 491 aa19.96■□□□□ 0.79
CLN3-250ENST00000636839 ACRV1P26436 265 aa19.96■□□□□ 0.79
CLN3-250ENST00000636839 CCINQ13939 588 aa19.96■□□□□ 0.79
CLN3-250ENST00000636839 HDAC8Q9BY41 377 aa19.96■□□□□ 0.79
CLN3-250ENST00000636839 CD248Q9HCU0 757 aa19.96■□□□□ 0.79
CLN3-250ENST00000636839 RUVBL2Q9Y230 463 aaKnown RBP19.96■□□□□ 0.79
CLN3-250ENST00000636839 PLIN3O60664 434 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 GLRA3O75311 464 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 MTX2O75431 263 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 SERPINB4P48594 390 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 POLD2P49005 469 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 IL9RQ01113 521 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 SF3A3Q12874 501 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-250ENST00000636839 ZNF648Q5T619 568 aaPredicted RBP19.95■□□□□ 0.78
CLN3-250ENST00000636839 AGBL4Q5VU57 503 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 SDE2Q6IQ49 451 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 TMEM92Q6UXU6 159 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 NXPE1Q8N323 547 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 HDDC3Q8N4P3 179 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 GPR78Q96P69 363 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 PLEKHG4BQ96PX9 1271 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 C19orf43Q9BQ61 176 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 P2RY12Q9H244 342 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 GPAMQ9HCL2 828 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 CPSF2Q9P2I0 782 aaKnown RBP19.95■□□□□ 0.78
CLN3-250ENST00000636839 FADS3Q9Y5Q0 445 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 AGAP14A8MT82 685 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 FADS2P1A8MWK0 482 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 TCP11X1B4DZS4 312 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 NPC1O15118 1278 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 WISP3O95389 354 aaPredicted RBP19.95■□□□□ 0.78
CLN3-250ENST00000636839 PROCP04070 461 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 CRABP2P29373 138 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 PTGER3P43115 390 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 B4GALNT1Q00973 533 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 CSHL1Q14406 222 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 TAF1BQ53T94 588 aaPredicted RBP19.95■□□□□ 0.78
CLN3-250ENST00000636839 AARS2Q5JTZ9 985 aaKnown RBP19.95■□□□□ 0.78
CLN3-250ENST00000636839 FAM46CQ5VWP2 391 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 CES4AQ5XG92 561 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 FAM45BPQ6NSW5 357 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 Q6ZS52 159 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 TMPRSS6Q8IU80 811 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 OR2T3Q8NH03 318 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 FAM45AQ8TCE6 357 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 COQ10AQ96MF6 247 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 ZNF317Q96PQ6 595 aaPredicted RBP19.95■□□□□ 0.78
CLN3-250ENST00000636839 IGSF5Q9NSI5 407 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 PSD3Q9NYI0 1048 aa19.95■□□□□ 0.78
CLN3-250ENST00000636839 ZNF106Q9H2Y7 1883 aaKnown RBP19.94■□□□□ 0.78
CLN3-250ENST00000636839 RNASEH1O60930 286 aaKnown RBP19.94■□□□□ 0.78
CLN3-250ENST00000636839 RHOBTB1O94844 696 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 CCDC166P0CW27 439 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 C6P13671 934 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 PKMP14618 531 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms