RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 EIF3HO15372 352 aaKnown RBP eCLIP19.58■□□□□ 0.72
UPF3A-211ENST00000618700 SRP72O76094 671 aaKnown RBP19.58■□□□□ 0.72
UPF3A-211ENST00000618700 PRAMEF1O95521 474 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 THEGLP0DJG4 465 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 ARNTP27540 789 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 CARSP49589 748 aaKnown RBP19.58■□□□□ 0.72
UPF3A-211ENST00000618700 CSNK1EP49674 416 aaKnown RBP19.58■□□□□ 0.72
UPF3A-211ENST00000618700 TUBB4BP68371 445 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 CDK3Q00526 305 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 CUL1Q13616 776 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 TEAD4Q15561 434 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 CHRNA6Q15825 494 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 ANKRD20A4Q4UJ75 823 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 ATP13A5Q4VNC0 1218 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 TPRG1LQ5T0D9 272 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 SLC23A3Q6PIS1 610 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 MICALCLQ6ZW33 695 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 ASCL5Q7RTU5 278 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 IGDCC3Q8IVU1 814 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 IFT20Q8IY31 132 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 FUBP1Q96AE4 644 aaKnown RBP19.58■□□□□ 0.72
UPF3A-211ENST00000618700 KLHDC7BQ96G42 594 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 COX14Q96I36 57 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 VPS35Q96QK1 796 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 SMOXQ9NWM0 555 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 MAD1L1Q9Y6D9 718 aa19.58■□□□□ 0.72
UPF3A-211ENST00000618700 PCDH15Q96QU1 1955 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 ZCWPW2A0A1B0GU75 182 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 CCDC162PA2VCL2 907 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 AGAP14A8MT82 685 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 PATE3B3GLJ2 98 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 GPR39O43194 453 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 GFRA3O60609 400 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 USP1O94782 785 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 MYCLP1P12525 358 aaPredicted RBP19.57■□□□□ 0.72
UPF3A-211ENST00000618700 PGAM1P18669 254 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 MC4RP32245 332 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 ELK3P41970 407 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 NXPH1P58417 271 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 BNC1Q01954 994 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 PDIA2Q13087 525 aaKnown RBP19.57■□□□□ 0.72
UPF3A-211ENST00000618700 NFATC2Q13469 925 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 ITGA9Q13797 1035 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 NFATC4Q14934 902 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 FASTKD3Q14CZ7 662 aaKnown RBP19.57■□□□□ 0.72
UPF3A-211ENST00000618700 KIAA0930Q6ICG6 404 aaPredicted RBP19.57■□□□□ 0.72
UPF3A-211ENST00000618700 AFTPHQ6ULP2 937 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 CES3Q6UWW8 571 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 CENPUQ71F23 418 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 DCP2Q8IU60 420 aaKnown RBP19.57■□□□□ 0.72
UPF3A-211ENST00000618700 HDAC10Q969S8 669 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 SGSM3Q96HU1 749 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 FCRL3Q96P31 734 aaPredicted RBP19.57■□□□□ 0.72
UPF3A-211ENST00000618700 HS3ST6Q96QI5 342 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 NAT9Q9BTE0 207 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 LGR4Q9BXB1 951 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 SUDS3Q9H7L9 328 aaPredicted RBP19.57■□□□□ 0.72
UPF3A-211ENST00000618700 PLAC1Q9HBJ0 212 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 TMPRSS11EQ9UL52 423 aa19.57■□□□□ 0.72
UPF3A-211ENST00000618700 TRBV5-4A0A0C4DH59 114 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 A0A1B0GVT2 93 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 TLR4O00206 839 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 ITGALP20701 1170 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 FOXN2P32314 431 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 CA5AP35218 305 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 PI4KAP42356 2102 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 TRIM61Q5EBN2 209 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 MACC1Q6ZN28 852 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 SNX20Q7Z614 316 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 SPATS2Q86XZ4 545 aaKnown RBP19.56■□□□□ 0.72
UPF3A-211ENST00000618700 CCNJLQ8IV13 435 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 ZNF398Q8TD17 642 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 BTN2A2Q8WVV5 523 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 IFT81Q8WYA0 676 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 GLYATL1Q969I3 302 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 ZNF669Q96BR6 464 aaPredicted RBP19.56■□□□□ 0.72
UPF3A-211ENST00000618700 HIC2Q96JB3 615 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 ANKZF1Q9H8Y5 726 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 PHPT1Q9NRX4 125 aaPredicted RBP19.56■□□□□ 0.72
UPF3A-211ENST00000618700 CHMP2BQ9UQN3 213 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 ANKRD6Q9Y2G4 727 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 RPS6KL1Q9Y6S9 549 aa19.56■□□□□ 0.72
UPF3A-211ENST00000618700 LAMA1P25391 3075 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 PLXNB3Q9ULL4 1909 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 SPTY2D1-AS1A0A0U1RR47 76 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 OR51F1A6NGY5 319 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 CACNB4O00305 520 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-211ENST00000618700 INPP4BO15327 924 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A9O60656 530 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 MAGEC1O60732 1142 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 TTC4O95801 387 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 GOT2P00505 430 aaKnown RBP19.55■□□□□ 0.72
UPF3A-211ENST00000618700 CFIP05156 583 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A6P19224 532 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A1P22309 533 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A4P22310 534 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A3P35503 534 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A5P35504 534 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 CTSKP43235 329 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 ARCN1P48444 511 aaKnown RBP19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms