RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 UGT1A5P35504 534 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 CCT5P48643 541 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 GYS2P54840 703 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 SLC12A2P55011 1212 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 CREB5Q02930 508 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 PDE1CQ14123 709 aaPredicted RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 DBN1Q16643 649 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 ZNF284Q2VY69 593 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 TTC31Q49AM3 519 aaPredicted RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 HECTD2Q5U5R9 776 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 FAM45BPQ6NSW5 357 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 TMEM92Q6UXU6 159 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 ZNF765Q7L2R6 523 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 CACUL1Q86Y37 369 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 NXPE1Q8N323 547 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 TRAM1L1Q8N609 369 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 ACVR1CQ8NER5 493 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 FAM45AQ8TCE6 357 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 ATXN2LQ8WWM7 1075 aaKnown RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 FAM131CQ96AQ9 280 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 DTD2Q96FN9 168 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 TSPAN17Q96FV3 270 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 APOPT1Q96IL0 206 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 AARSD1Q9BTE6 412 aaKnown RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 RIOK2Q9BVS4 552 aaKnown RBP13.6□□□□□ -0.23
CCDC40-209ENST00000573474 SPATA16Q9BXB7 569 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 ABCG8Q9H221 673 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 CAB39LQ9H9S4 337 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 LTB4R2Q9NPC1 389 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 PCMTD2Q9NV79 361 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 MKS1Q9NXB0 559 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 KCTD5Q9NXV2 234 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 NKIRAS1Q9NYS0 192 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 CD84Q9UIB8 345 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 TLK1Q9UKI8 766 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 NCKAP1Q9Y2A7 1128 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 COMMD10Q9Y6G5 202 aa13.6□□□□□ -0.23
CCDC40-209ENST00000573474 UNC80Q8N2C7 3258 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 FAM170BA6NMN3 283 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ATG13O75143 517 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 RECQL5O94762 991 aaPredicted RBP13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ZWINTO95229 277 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ACADMP11310 421 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ZNF7P17097 686 aaPredicted RBP13.59□□□□□ -0.23
CCDC40-209ENST00000573474 GM2AP17900 193 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 SAT1P21673 171 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 FMO4P31512 558 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 CRHR1P34998 444 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 CSRP3P50461 194 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ADARP55265 1226 aaKnown RBP13.59□□□□□ -0.23
CCDC40-209ENST00000573474 TAS2R38P59533 333 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 TAS2R39P59534 338 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 RAB10P61026 200 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 MPP2Q14168 576 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ITIH4Q14624 930 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 UBXN2BQ14CS0 331 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ZKSCAN8Q15776 578 aaPredicted RBP13.59□□□□□ -0.23
CCDC40-209ENST00000573474 CRY1Q16526 586 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ATP13A5Q4VNC0 1218 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 RBM20Q5T481 1227 aaKnown RBP13.59□□□□□ -0.23
CCDC40-209ENST00000573474 HENMT1Q5T8I9 393 aaKnown RBP13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ZNF549Q6P9A3 640 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 USP30Q70CQ3 517 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 RAPH1Q70E73 1250 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 CCDC91Q7Z6B0 441 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 CMC1Q7Z7K0 106 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 KBTBD6Q86V97 674 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 NLRP8Q86W28 1048 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 RBFAQ8N0V3 343 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 SIX5Q8N196 739 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 MDM1Q8TC05 714 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 DENND1AQ8TEH3 1009 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 SCAMP4Q969E2 229 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 AP2M1Q96CW1 435 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 MRGPRX1Q96LB2 322 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 NDNQ99608 321 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ZSCAN5AQ9BUG6 496 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 SLC13A1Q9BZW2 595 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 SLC6A17Q9H1V8 727 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 VPS11Q9H270 941 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 CCDC68Q9H2F9 335 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 POLMQ9NP87 494 aaPredicted RBP13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ZDHHC3Q9NYG2 299 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 SERGEFQ9UGK8 458 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 DCDC2Q9UHG0 476 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 FZD4Q9ULV1 537 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 ANKRD6Q9Y2G4 727 aa13.59□□□□□ -0.23
CCDC40-209ENST00000573474 MTF2Q9Y483 593 aaPredicted RBP13.59□□□□□ -0.23
CCDC40-209ENST00000573474 A0A096LPK6 155 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 TCRBV21S2A2A0A5A6 115 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 PRMT5O14744 637 aaPredicted RBP13.58□□□□□ -0.24
CCDC40-209ENST00000573474 TM9SF1O15321 606 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 GPR39O43194 453 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 OR1I1O60431 355 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 PCDH8O95206 1070 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 ESR1P03372 595 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 C2P06681 752 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 GSTA1P08263 222 aa13.58□□□□□ -0.24
CCDC40-209ENST00000573474 PKMP14618 531 aaKnown RBP13.58□□□□□ -0.24
CCDC40-209ENST00000573474 CHN1P15882 459 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms