RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PRKCQQ04759 706 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 GPR17Q13304 367 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 LARP7Q4G0J3 582 aaKnown RBP eCLIP22.66■■□□□ 1.22
VPS53-211ENST00000571805 FBXO48Q5FWF7 155 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 PPP4R4Q6NUP7 873 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 BLOC1S3Q6QNY0 202 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 SPATA31D4Q6ZUB0 917 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 ERMP1Q7Z2K6 904 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 FUBP1Q96AE4 644 aaKnown RBP22.66■■□□□ 1.22
VPS53-211ENST00000571805 PPWD1Q96BP3 646 aaKnown RBP22.66■■□□□ 1.22
VPS53-211ENST00000571805 PTTG2Q9NZH5 202 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 GALPQ9UBC7 116 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 SEPT3Q9UH03 358 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 GPR45Q9Y5Y3 372 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 AQP12BA6NM10 295 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 H3BNC9 293 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 CDC7O00311 574 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 HTRA2O43464 458 aaPredicted RBP22.65■■□□□ 1.22
VPS53-211ENST00000571805 PRLP01236 227 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 SLC6A2P23975 617 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 NR1H2P55055 460 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 SH3BGRP55822 239 aaPredicted RBP22.65■■□□□ 1.22
VPS53-211ENST00000571805 ANKS6Q68DC2 871 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 AFTPHQ6ULP2 937 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 AQP12AQ8IXF9 295 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 SMIM14Q96QK8 99 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 COMMD8Q9NX08 183 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 DUS2Q9NX74 493 aaKnown RBP22.65■■□□□ 1.22
VPS53-211ENST00000571805 PRR35P0CG20 571 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 CR2P20023 1033 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 CHRM3P20309 590 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 CDKN1CP49918 316 aaPredicted RBP22.65■■□□□ 1.22
VPS53-211ENST00000571805 DIO3P55073 304 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 RAD51Q06609 339 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 CAPRIN1Q14444 709 aaKnown RBP22.65■■□□□ 1.22
VPS53-211ENST00000571805 TAF1AQ15573 450 aaPredicted RBP22.65■■□□□ 1.22
VPS53-211ENST00000571805 ZBTB49Q6ZSB9 765 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 BBS5Q8N3I7 341 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 LRRC58Q96CX6 371 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 BIRC8Q96P09 236 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 TCF12Q99081 682 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 GPR21Q99679 349 aa22.65■■□□□ 1.22
VPS53-211ENST00000571805 OAS3Q9Y6K5 1087 aaKnown RBP22.65■■□□□ 1.22
VPS53-211ENST00000571805 ZFP37Q9Y6Q3 630 aaPredicted RBP22.65■■□□□ 1.22
VPS53-211ENST00000571805 FAM155AB1AL88 458 aaPredicted RBP22.64■■□□□ 1.22
VPS53-211ENST00000571805 SOCS2O14508 198 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 ACSL4O60488 711 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 VPS4BO75351 444 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 IDO1P14902 403 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 MTA1Q13330 715 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 COQ5Q5HYK3 327 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 NHSL2Q5HYW2 709 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 OGFOD2Q6N063 350 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 GIPC2Q8TF65 315 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 TBRG4Q969Z0 631 aaKnown RBP eCLIP22.64■■□□□ 1.22
VPS53-211ENST00000571805 SLC45A3Q96JT2 553 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 SLC30A3Q99726 388 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 TMEM79Q9BSE2 394 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 ZBED2Q9BTP6 218 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 C1QTNF3Q9BXJ4 246 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 TIMM22Q9Y584 194 aa22.64■■□□□ 1.22
VPS53-211ENST00000571805 KLK8O60259 260 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 TBC1D4O60343 1298 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 PRKAR2AP13861 404 aaKnown RBP22.64■■□□□ 1.21
VPS53-211ENST00000571805 SCNN1BP51168 640 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 DUSP4Q13115 394 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 ADRM1Q16186 407 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 BORAQ6PGQ7 559 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 B3GNT6Q6ZMB0 384 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 GLT6D1Q7Z4J2 308 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 SPPL2CQ8IUH8 684 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 RMDN1Q96DB5 314 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 MPP4Q96JB8 637 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 CINPQ9BW66 212 aaPredicted RBP22.64■■□□□ 1.21
VPS53-211ENST00000571805 OLAHQ9NV23 265 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 GID8Q9NWU2 228 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 UBA2Q9UBT2 640 aaPredicted RBP22.64■■□□□ 1.21
VPS53-211ENST00000571805 EGFL7Q9UHF1 273 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 ZNF225Q9UK10 706 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 DMTF1Q9Y222 760 aa22.64■■□□□ 1.21
VPS53-211ENST00000571805 A0A1B0GVG6 124 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 INSIG1O15503 277 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 AKAP10O43572 662 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 KDELR3O43731 214 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 NDUFS3O75489 264 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 PRDX3P30048 256 aaKnown RBP22.63■■□□□ 1.21
VPS53-211ENST00000571805 ZFP36L2P47974 494 aaKnown RBP22.63■■□□□ 1.21
VPS53-211ENST00000571805 ACLYP53396 1101 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 RPS6KA2Q15349 733 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 CYTH1Q15438 398 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 LCN8Q6JVE9 175 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 EXOC2Q96KP1 924 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 SPON2Q9BUD6 331 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 CCDC68Q9H2F9 335 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 MARCH5Q9NX47 278 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 PCDHA9Q9Y5H5 950 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 PLOD2O00469 737 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 CA12O43570 354 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 MRPL19P49406 292 aaKnown RBP22.63■■□□□ 1.21
VPS53-211ENST00000571805 AGTR2P50052 363 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms