RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.97□□□□□ -0.65
VPS53-207ENST00000570510 PYCR3Q53H96 274 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 CDKAL1Q5VV42 579 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 TAF3Q5VWG9 929 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 LYPLAL1Q5VWZ2 237 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 IYDQ6PHW0 289 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 SLFN11Q7Z7L1 901 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 TRIM48Q8IWZ4 208 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 TSEN2Q8NCE0 465 aaKnown RBP10.97□□□□□ -0.65
VPS53-207ENST00000570510 RXFP2Q8WXD0 754 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 DTD2Q96FN9 168 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 HERPUD2Q9BSE4 406 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 TBC1D10AQ9BXI6 508 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 BRD8Q9H0E9 1235 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 AGPAT4Q9NRZ5 378 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 TMEM59LQ9UK28 342 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 RARRES3Q9UL19 164 aa10.97□□□□□ -0.65
VPS53-207ENST00000570510 FARSAQ9Y285 508 aaKnown RBP10.97□□□□□ -0.65
VPS53-207ENST00000570510 MN1Q10571 1320 aaPredicted RBP10.96□□□□□ -0.65
VPS53-207ENST00000570510 KIR2DS5A0A0G2JLQ3 304 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 A0A0G2JNG1 304 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 A0A1W2PQ67 120 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 SSU72P8A0A1W2PR75 194 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 ARHGAP42A6NI28 874 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 OR5K4A6NMS3 321 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 J3KR12 359 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 KIR2DS3K7RE56 304 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 UBXN7O94888 489 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 HEXIM1O94992 359 aaKnown RBP10.96□□□□□ -0.65
VPS53-207ENST00000570510 FGF5P12034 268 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 GM2AP17900 193 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 PON1P27169 355 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 PTGIRP43119 386 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 GLRBP48167 497 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 ARL4DP49703 201 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 RRADP55042 308 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 RAPSNQ13702 412 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 KIR2DS5Q14953 304 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 CNGA3Q16281 694 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 PLEKHN1Q494U1 663 aaPredicted RBP10.96□□□□□ -0.65
VPS53-207ENST00000570510 CACHD1Q5VU97 1274 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 SCYL2Q6P3W7 929 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 FAM199XQ6PEV8 388 aaPredicted RBP10.96□□□□□ -0.65
VPS53-207ENST00000570510 Q6ZVL8 140 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 ARCQ7LC44 396 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 BNIPLQ7Z465 357 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 GDF7Q7Z4P5 450 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 TRIM74Q86UV6 250 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 CCDC185Q8N715 623 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 RBMXL3Q8N7X1 1067 aaKnown RBP10.96□□□□□ -0.65
VPS53-207ENST00000570510 FDCSPQ8NFU4 85 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 FNIP1Q8TF40 1166 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 CPA5Q8WXQ8 436 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 ECHDC3Q96DC8 303 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 ZDHHC12Q96GR4 267 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 MAGEB5Q9BZ81 275 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 NOL6Q9H6R4 1146 aaKnown RBP10.96□□□□□ -0.65
VPS53-207ENST00000570510 SP110Q9HB58 689 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 TMEM63CQ9P1W3 806 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 CPNE7Q9UBL6 633 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 B3GNT3Q9Y2A9 372 aa10.96□□□□□ -0.65
VPS53-207ENST00000570510 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 FOXN3O00409 490 aaPredicted RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 FGF10O15520 208 aaPredicted RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 PRAMEF11O60813 436 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 TMEM63AO94886 807 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 LSM8O95777 96 aaKnown RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 EML2O95834 649 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 CPP00450 1065 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 VIPP01282 170 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 ALPPP05187 535 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 PYGLP06737 847 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 F3P13726 295 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 TEAD1P28347 426 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 CLCN1P35523 988 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 RGRP47804 291 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 RENBPP51606 427 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 AP1S1P61966 158 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 APBA1Q02410 837 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 NSUN2Q08J23 767 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS53-207ENST00000570510 TUBB3Q13509 450 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 ZRSR2Q15696 482 aaKnown RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 CCDC14Q49A88 953 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 RAB6CQ53S08 254 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 MIIPQ5JXC2 388 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 FKBP15Q5T1M5 1219 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 HGSNATQ68CP4 663 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 TRNP1Q6NT89 227 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 STRADAQ7RTN6 431 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 HSD11B1LQ7Z5J1 315 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 PHYKPLQ8IUZ5 450 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 NDUFAF2Q8N183 169 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 UMODL1-AS1Q8N2C9 162 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 PYROXD2Q8N2H3 581 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 SIDT2Q8NBJ9 832 aaKnown RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 FAM172AQ8WUF8 416 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 MR1Q95460 341 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 AP2M1Q96CW1 435 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 SCARF2Q96GP6 870 aaPredicted RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 CELF6Q96J87 481 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms