RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 LRRC26Q2I0M4 334 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 ANO7Q6IWH7 933 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 KBTBD6Q86V97 674 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 BBS7Q8IWZ6 715 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 SNX31Q8N9S9 440 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 CD200R1Q8TD46 325 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 TRPC4APQ8TEL6 797 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 USP13Q92995 863 aaPredicted RBP20.15■□□□□ 0.82
CLN3-230ENST00000568076 MYO19Q96H55 970 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.15■□□□□ 0.82
CLN3-230ENST00000568076 CFAP97Q9P2B7 532 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 PTGDR2Q9Y5Y4 395 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 KIAA1671Q9BY89 1806 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 VPS26AO75436 327 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 CKMP06732 381 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 GJA1P17302 382 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 CD9P21926 228 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 PKNOX1P55347 436 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 AP1S1P61966 158 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 ART3Q13508 389 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 FBXO39Q8N4B4 442 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 NKAPQ8N5F7 415 aaKnown RBP20.15■□□□□ 0.82
CLN3-230ENST00000568076 CCDC97Q96F63 343 aaPredicted RBP20.15■□□□□ 0.82
CLN3-230ENST00000568076 ASB2Q96Q27 587 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 KCNA7Q96RP8 456 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 YME1L1Q96TA2 773 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 MAGEE1Q9HCI5 957 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 EVLQ9UI08 416 aaPredicted RBP20.15■□□□□ 0.82
CLN3-230ENST00000568076 H3BNX3 289 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 PSMD12O00232 456 aaPredicted RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 BTN3A1O00481 513 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 FGF18O76093 207 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 PYGLP06737 847 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 XRCC1P18887 633 aaPredicted RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 GKP32189 559 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 HMGCLP35914 325 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 FASTKQ14296 549 aaKnown RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 ARMC12Q5T9G4 340 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 KANK2Q63ZY3 851 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 HTR3DQ70Z44 454 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 TAS2R42Q7RTR8 314 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 DHDDSQ86SQ9 333 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 EEF1AKMT1Q8WVE0 214 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 MRPS31Q92665 395 aaKnown RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 SERPINI1Q99574 410 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 ZNF184Q99676 751 aaPredicted RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 C2orf49Q9BVC5 232 aaPredicted RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 P2RY12Q9H244 342 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 LSM7Q9UK45 103 aaKnown RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 ADAMTS6Q9UKP5 1117 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 PKP3Q9Y446 797 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 ASB3Q9Y575 518 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 EIF4E1BA6NMX2 242 aaKnown RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 IQCF5A8MTL0 148 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 FBP2O00757 339 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 AZIN1O14977 448 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 GPC4O75487 556 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 TIMP1P01033 207 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 ALDOCP09972 364 aaKnown RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 LINC00271P0C7V0 271 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 CA5AP35218 305 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 MSX2P35548 267 aaPredicted RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 SLC7A9P82251 487 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 LMAN2Q12907 356 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 AGKQ53H12 422 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 TPGS1Q6ZTW0 290 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 TWIST2Q8WVJ9 160 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 KCNJ9Q92806 393 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 GPR63Q9BZJ6 419 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 TUBB1Q9H4B7 451 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 AKTIPQ9H8T0 292 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 CCDC167Q9P0B6 97 aa20.14■□□□□ 0.81
CLN3-230ENST00000568076 TRMT6Q9UJA5 497 aaKnown RBP20.14■□□□□ 0.81
CLN3-230ENST00000568076 GAPDHSO14556 408 aaPredicted RBP20.13■□□□□ 0.81
CLN3-230ENST00000568076 PFDN6O15212 129 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 KLK8O60259 260 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 RPS17P08708 135 aaKnown RBP20.13■□□□□ 0.81
CLN3-230ENST00000568076 CTSAP10619 480 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 PPM1AP35813 382 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 PTGER3P43115 390 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 HK3P52790 923 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 ADARP55265 1226 aaKnown RBP20.13■□□□□ 0.81
CLN3-230ENST00000568076 MS4A2Q01362 244 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 CLCQ05315 142 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 AARS2Q5JTZ9 985 aaKnown RBP20.13■□□□□ 0.81
CLN3-230ENST00000568076 CPNE9Q8IYJ1 553 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 CPXM2Q8N436 756 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 RNF148Q8N7C7 305 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 OR9I1Q8NGQ6 314 aa20.13■□□□□ 0.81
CLN3-230ENST00000568076 NCF1BA6NI72 391 aaPredicted RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 NCF1CA8MVU1 366 aaPredicted RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 PIP5K1BO14986 540 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 ZNF821O75541 412 aaPredicted RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 NCF1P14598 390 aaPredicted RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 RAG1P15918 1043 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 CHRM3P20309 590 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 CD70P32970 193 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 AGTR2P50052 363 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 CACNG1Q06432 222 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 BLMHQ13867 455 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms