RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 HOPXQ9BPY8 73 aaPredicted RBP9.82□□□□□ -0.84
SS18-205ENST00000542420 NUDT4Q9NZJ9 180 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 CRYL1Q9Y2S2 319 aa9.82□□□□□ -0.84
SS18-205ENST00000542420 A0A1W2PQ67 120 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 OR51F1A6NGY5 319 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 TRIM24O15164 1050 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 CDK14O94921 469 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 C1RP00736 705 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 JUNP05412 331 aaKnown RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 C8BP07358 591 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 PRR35P0CG20 571 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 HNRNPLP14866 589 aaKnown RBP eCLIP9.81□□□□□ -0.843e-8■■■■□ 22.8
SS18-205ENST00000542420 HMGCLP35914 325 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 RGRP47804 291 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 PLK1P53350 603 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 C1QTNF8P60827 252 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 PSME3P61289 254 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 SMU1Q2TAY7 513 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 SAMD4BQ5PRF9 694 aaKnown RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 OR52E8Q6IFG1 317 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 RETSATQ6NUM9 610 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 SLC39A5Q6ZMH5 540 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 RNF135Q8IUD6 432 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 CBARPQ8N350 705 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 SPATA6LQ8N4H0 392 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 CARNMT1Q8N4J0 409 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 ZNF557Q8N988 423 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 ALG14Q96F25 216 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 CDRT15Q96T59 188 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 C2orf49Q9BVC5 232 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 MUC3BQ9H195 1237 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 Q9H521 79 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 SUDS3Q9H7L9 328 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 CYP4F12Q9HCS2 524 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 CACNA2D2Q9NY47 1150 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 SPG21Q9NZD8 308 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 TRMT6Q9UJA5 497 aaKnown RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 LSM7Q9UK45 103 aaKnown RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 RNF112Q9ULX5 631 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 MED16Q9Y2X0 877 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 ZNF711Q9Y462 761 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 MTF2Q9Y483 593 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 TNPO3Q9Y5L0 923 aaKnown RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 PRSS51A0A1B0GVH4 220 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 UBFD1O14562 309 aaKnown RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 ACOT8O14734 319 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 AP1G1O43747 822 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 NRP2O60462 931 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 GREM1O60565 184 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 PDE5AO76074 875 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 BAG2O95816 211 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 CD160O95971 181 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 CHEK2O96017 543 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 NPPAP01160 153 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 IDO1P14902 403 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 UQCRBP14927 111 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 LBPP18428 481 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 TPP2P29144 1249 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 MAGEA10P43363 369 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 THOP1P52888 689 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 SLC7A9P82251 487 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 TRIM25Q14258 630 aaKnown RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 OR4D1Q15615 310 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 LRRC23Q53EV4 343 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 SETMARQ53H47 684 aaPredicted RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 RARS2Q5T160 578 aaKnown RBP9.81□□□□□ -0.84
SS18-205ENST00000542420 REP15Q6BDI9 236 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 LPCAT1Q8NF37 534 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 PHF21BQ96EK2 531 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 BIRC8Q96P09 236 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 LYSMD1Q96S90 227 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 FAM192AQ9GZU8 254 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 P2RY12Q9H244 342 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 SPAG4Q9NPE6 437 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 IL17CQ9P0M4 197 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 TBX21Q9UL17 535 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 PKP3Q9Y446 797 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 PCDHGA7Q9Y5G6 932 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 INSL5Q9Y5Q6 135 aa9.81□□□□□ -0.84
SS18-205ENST00000542420 TMEM233B4DJY2 109 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 CBX4O00257 560 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 EIF3FO00303 357 aaPredicted RBP9.8□□□□□ -0.84
SS18-205ENST00000542420 HTRA2O43464 458 aaPredicted RBP9.8□□□□□ -0.84
SS18-205ENST00000542420 UROSP10746 265 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 MBL2P11226 248 aaPredicted RBP9.8□□□□□ -0.84
SS18-205ENST00000542420 GFAPP14136 432 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 RAG1P15918 1043 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 GPX3P22352 226 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 MC4RP32245 332 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 IL2P60568 153 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 CLCQ05315 142 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 TRAF2Q12933 501 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 CEACAM7Q14002 265 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 ADGRE1Q14246 886 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 CDKL4Q5MAI5 379 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 PPM1LQ5SGD2 360 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 TMEM198Q66K66 360 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 TRIM68Q6AZZ1 485 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 HTR3DQ70Z44 454 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 DNAJB7Q7Z6W7 309 aaPredicted RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms