RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PAK5Q9P286 719 aa14.93□□□□□ -0.02
CPSF1-208ENST00000532560 MOSPD1Q9UJG1 213 aa14.93□□□□□ -0.02
CPSF1-208ENST00000532560 ANGPTL2Q9UKU9 493 aa14.93□□□□□ -0.02
CPSF1-208ENST00000532560 SUFUQ9UMX1 484 aa14.93□□□□□ -0.02
CPSF1-208ENST00000532560 DOLKQ9UPQ8 538 aa14.93□□□□□ -0.02
CPSF1-208ENST00000532560 PKP3Q9Y446 797 aa14.93□□□□□ -0.02
CPSF1-208ENST00000532560 ZNF106Q9H2Y7 1883 aaKnown RBP14.93□□□□□ -0.02
CPSF1-208ENST00000532560 CES2O00748 559 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 FUCA1P04066 466 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 SPAM1P38567 509 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 GNPDA1P46926 289 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 POLD2P49005 469 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 DUSP3P51452 185 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-208ENST00000532560 SPARCL1Q14515 664 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 PDCD7Q8N8D1 485 aaKnown RBP14.92□□□□□ -0.02
CPSF1-208ENST00000532560 PRELID2Q8N945 189 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 BRSK1Q8TDC3 778 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 GPBAR1Q8TDU6 330 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 PTCD2Q8WV60 388 aaKnown RBP14.92□□□□□ -0.02
CPSF1-208ENST00000532560 ANKRD7Q92527 254 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 VPS35Q96QK1 796 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 OR2M4Q96R27 311 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 OSBPL9Q96SU4 736 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 NAP1L3Q99457 506 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-208ENST00000532560 C19orf43Q9BQ61 176 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 BPIFA1Q9NP55 256 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 TMEM98Q9Y2Y6 226 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 ARL5AQ9Y689 179 aa14.92□□□□□ -0.02
CPSF1-208ENST00000532560 OAS3Q9Y6K5 1087 aaKnown RBP14.92□□□□□ -0.02
CPSF1-208ENST00000532560 C2orf81A6NN90 581 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GPR89AB7ZAQ6 455 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 PGRMC1O00264 195 aaKnown RBP14.91□□□□□ -0.02
CPSF1-208ENST00000532560 STX7O15400 261 aaKnown RBP14.91□□□□□ -0.02
CPSF1-208ENST00000532560 HYAL3O43820 417 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-208ENST00000532560 DNAJC6O75061 913 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GP1BAP07359 652 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GPR89BP0CG08 455 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 LPOP22079 712 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-208ENST00000532560 RPIAP49247 311 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 PDE1BQ01064 536 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 ILF3Q12906 894 aaKnown RBP eCLIP14.91□□□□□ -0.02
CPSF1-208ENST00000532560 SEMA5AQ13591 1074 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 LRP8Q14114 963 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 NR0B2Q15466 257 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 TCEA2Q15560 299 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 C4orf22Q6V702 233 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 TAF8Q7Z7C8 310 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 LINC00523Q86TU6 105 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 PHYKPLQ8IUZ5 450 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 SLC35F3Q8IY50 421 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 CHCHD4Q8N4Q1 142 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 TAB3Q8N5C8 712 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-208ENST00000532560 ARL10Q8N8L6 244 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GLIS1Q8NBF1 620 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 COG1Q8WTW3 980 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GLMNQ92990 594 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GLYATL1Q969I3 302 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GSDMCQ9BYG8 508 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 RMI1Q9H9A7 625 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 ETNK1Q9HBU6 452 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 IL26Q9NPH9 171 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 SNX12Q9UMY4 172 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GPR34Q9UPC5 381 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 NEUROG3Q9Y4Z2 214 aa14.91□□□□□ -0.02
CPSF1-208ENST00000532560 GOLGA4Q13439 2230 aaKnown RBP14.9□□□□□ -0.02
CPSF1-208ENST00000532560 GLYATL1P3A0A0U1RQE8 302 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 SUN1O94901 812 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 SLC25A14O95258 325 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-208ENST00000532560 ASMTLO95671 621 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 CRTAMO95727 393 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 TOP3BO95985 862 aaKnown RBP14.9□□□□□ -0.02
CPSF1-208ENST00000532560 ETS1P14921 441 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 ZNF140P52738 457 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-208ENST00000532560 SMAD1Q15797 465 aaKnown RBP14.9□□□□□ -0.02
CPSF1-208ENST00000532560 CYP1B1Q16678 543 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 ATP13A5Q4VNC0 1218 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 PYCR3Q53H96 274 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 CCDC157Q569K6 752 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 NRROSQ86YC3 692 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 GALNT13Q8IUC8 556 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 KYQ8NBH2 561 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 OR4K2Q8NGD2 314 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 CCL4L1Q8NHW4 92 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 ACTRT1Q8TDG2 376 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 MS4A14Q96JA4 679 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 SCNM1Q9BWG6 230 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 SUDS3Q9H7L9 328 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-208ENST00000532560 RAB6BQ9NRW1 208 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 SMOXQ9NWM0 555 aa14.9□□□□□ -0.02
CPSF1-208ENST00000532560 EME2A4GXA9 379 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-208ENST00000532560 FAM221BA6H8Z2 402 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 E7EVH7 732 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 GAPDHSO14556 408 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-208ENST00000532560 BUD23O43709 281 aaKnown RBP14.89□□□□□ -0.03
CPSF1-208ENST00000532560 NUAK1O60285 661 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 TCP1P17987 556 aaKnown RBP14.89□□□□□ -0.03
CPSF1-208ENST00000532560 RPL22P35268 128 aaKnown RBP14.89□□□□□ -0.03
CPSF1-208ENST00000532560 ADCY8P40145 1251 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 KCNJ1P48048 391 aa14.89□□□□□ -0.03
CPSF1-208ENST00000532560 E2F1Q01094 437 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms