RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SLC1A2P43004 574 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 GNPDA1P46926 289 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CCR4P51679 360 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF404Q494X3 552 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SEMA4DQ92854 862 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PPCDCQ96CD2 204 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF570Q96NI8 536 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 DCSTAMPQ9H295 470 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 TMEM27Q9HBJ8 222 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 MYNNQ9NPC7 610 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 IFT52Q9Y366 437 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ANXA2P2A6NMY6 339 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 TTLL13PA6NNM8 815 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CALCAP01258 141 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ANXA2P07355 339 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 EPORP19235 508 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 KIR3DL1P43629 444 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PLK1P53350 603 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 MLLT6P55198 1093 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 RASGEF1BQ0VAM2 473 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SIM2Q14190 667 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 EFCAB12Q6NXP0 572 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ACOT1Q86TX2 421 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 MFSD2AQ8NA29 543 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 OR2L3Q8NG85 312 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC44A1Q8WWI5 657 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 RDH12Q96NR8 316 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SLCO1B3Q9NPD5 702 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 DPP7Q9UHL4 492 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PADI2Q9Y2J8 665 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PXDNLA1KZ92 1463 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ZSCAN5BA6NJL1 495 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CCNB2O95067 398 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CCNB1P14635 433 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PRKACAP17612 351 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 GNAZP19086 355 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 GLDCP23378 1020 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 POLR2JP52435 117 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 AIF1P55008 147 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CDK18Q07002 472 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 CARTPTQ16568 116 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 TIGD6Q17RP2 521 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 DPY19L1Q2PZI1 675 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SERPINA13PQ6UXR4 307 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PIGWQ7Z7B1 504 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ZBTB46Q86UZ6 589 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ADGRG2Q8IZP9 1017 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PGBD3Q8N328 593 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 FITM2Q8N6M3 262 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC44A5Q8NCS7 719 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ZSWIM3Q96MP5 696 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ERVK-11Q9UQG0 969 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 PRDM15P57071 1507 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 TTC37Q6PGP7 1564 aa11.18□□□□□ -0.62
LIMCH1-217ENST00000512946 ATP6AP2A0A1C7CYW4 349 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC9A3R1O14745 358 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 MTHFD1P11586 935 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 PSEN1P49768 467 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 AIMP2Q13155 320 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 FADDQ13158 208 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 MFSD10Q14728 455 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 BRMS1LQ5PSV4 323 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 BAIAP2L2Q6UXY1 529 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 USP45Q70EL2 814 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SNX20Q7Z614 316 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 JAZF1Q86VZ6 243 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 PAQR7Q86WK9 346 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 OR5T3Q8NGG3 340 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 PIGXQ8TBF5 258 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 RIT1Q92963 219 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 FAM84AQ96KN4 292 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 FCRL4Q96PJ5 515 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 CNPPD1Q9BV87 410 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 NUSAP1Q9BXS6 441 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SNX15Q9NRS6 342 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 EGFL7Q9UHF1 273 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 FKBP7Q9Y680 259 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 IQCMA0A1B0GVH7 501 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 MCIDASD6RGH6 385 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 STK25O00506 426 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ZMPSTE24O75844 475 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 TGM6O95932 706 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 STAG3L1P0CL83 205 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 PRPS2P11908 318 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 HSD3B2P26439 372 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 PEX2P28328 305 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 MIPP30301 263 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 TMBIM6P55061 237 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ABRQ12979 859 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SPP2Q13103 211 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 LARS2Q15031 903 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 CPTPQ5TA50 214 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ZPBP2Q6X784 338 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 CUZD1Q86UP6 607 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 CENPSQ8N2Z9 138 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 PRELID2Q8N945 189 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 CHST4Q8NCG5 386 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 TBC1D15Q8TC07 691 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 TSEN15Q8WW01 171 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 EXOC2Q96KP1 924 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms