RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OAZ2O95190 189 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 BMP2P12643 396 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 GRIA3P42263 894 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PRKCQQ04759 706 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 POLD3Q15054 466 aaPredicted RBP16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CYTH1Q15438 398 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PFKFB4Q16877 469 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TCTN1Q2MV58 587 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 KIF19Q2TAC6 998 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 VPS26BQ4G0F5 336 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 NHSL2Q5HYW2 709 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 IL31Q6EBC2 164 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PPP4R4Q6NUP7 873 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 SLC15A3Q8IY34 581 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ATP6V0D2Q8N8Y2 350 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PCYOX1LQ8NBM8 494 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 TSPAN14Q8NG11 270 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 RHEBL1Q8TAI7 183 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 BLOC1S5Q8TDH9 187 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 C17orf50Q8WW18 174 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PPP1R14BQ96C90 147 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 ASB2Q96Q27 587 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 IL1RL2Q9HB29 575 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 POPDC3Q9HBV1 291 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 PDE4DIPQ5VU43 2346 aa16.02■□□□□ 0.16
MSH5-SAPCD1-208ENST00000498473 CCDC160A6NGH7 325 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 H3BNH8 94 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SOCS2O14508 198 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 INPPL1O15357 1258 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RPP40O75818 363 aaKnown RBP16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PRSS56P0CW18 603 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 NELFEP18615 380 aaKnown RBP16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PBX3P40426 434 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GALNT3Q14435 633 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ADRM1Q16186 407 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SETMARQ53H47 684 aaPredicted RBP16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ERMP1Q7Z2K6 904 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MINDY1Q8N5J2 469 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TTC9BQ8N6N2 239 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GPR152Q8TDT2 470 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PEX13Q92968 403 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HIC2Q96JB3 615 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FEM1CQ96JP0 617 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 BTN2A3PQ96KV6 586 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HOPXQ9BPY8 73 aaPredicted RBP16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMEM79Q9BSE2 394 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 AARSD1Q9BTE6 412 aaKnown RBP16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 EFHD1Q9BUP0 239 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FBXO44Q9H4M3 255 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TFB2MQ9H5Q4 396 aaKnown RBP16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CCM2LQ9NUG4 571 aaPredicted RBP16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CMTM6Q9NX76 183 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 IL37Q9NZH6 218 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 IKZF3Q9UKT9 509 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 NDUFAF1Q9Y375 327 aa16.02■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 UNC80Q8N2C7 3258 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 C9JVG2 144 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RAMP2O60895 175 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 H6PDO95479 791 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PIRTP0C851 137 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PCSK6P29122 969 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SLC5A2P31639 672 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ALDH3B2P48448 385 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRIP4Q15650 581 aaPredicted RBP16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRAF7Q6Q0C0 670 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMCO2Q7Z6W1 182 aaPredicted RBP16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RNF168Q8IYW5 571 aaPredicted RBP16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRPC4APQ8TEL6 797 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ANKRD60Q9BZ19 345 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HIPK3Q9H422 1215 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PREBQ9HCU5 417 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MED16Q9Y2X0 877 aa16.01■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRIM43BA6NCK2 446 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DLGAP1O14490 977 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PRAMEF11O60813 436 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MATN4O95460 622 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FGF1P05230 155 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZNF23P17027 643 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HOXB8P17481 243 aaPredicted RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HLA-DPA1P20036 260 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GPNMBQ14956 572 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MRNIPQ6NTE8 343 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZBTB49Q6ZSB9 765 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MIB1Q86YT6 1006 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ALDH16A1Q8IZ83 802 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DCP1BQ8IZD4 617 aaKnown RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MIER2Q8N344 545 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 OR4L1Q8NH43 312 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 BRSK1Q8TDC3 778 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRIM43Q96BQ3 446 aaPredicted RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FUBP3Q96I24 572 aaKnown RBP eCLIP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SLC45A3Q96JT2 553 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 POLR1EQ9GZS1 481 aaKnown RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SDR39U1Q9NRG7 319 aaPredicted RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMEM39AQ9NV64 488 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HSFX1Q9UBD0 423 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 POLG2Q9UHN1 485 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 C5orf42Q9H799 3197 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CHD5Q8TDI0 1954 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 VWA8A3KMH1 1905 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms