RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	LRRC39	Q96DD0	335 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	CDKN2AIPNL	Q96HQ2	116 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	WDR92	Q96MX6	357 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	VPS35	Q96QK1	796 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	AGAP2	Q99490	1192 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	NAT9	Q9BTE0	207 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	SMOC1	Q9H4F8	434 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	GPR27	Q9NS67	375 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	SEMA4G	Q9NTN9	838 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	DMGDH	Q9UI17	866 aa	Known RBP	13.07	□□□□□ -0.32
SF1-206	ENST00000413725	GVINP1	Q7Z2Y8	2422 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	DMD	P11532	3685 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	BPTF	Q12830	3046 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SPTY2D1-AS1	A0A0U1RR47	76 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	FAM237B	A0A1B0GVD1	139 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	CCL22	O00626	93 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ARHGAP33	O14559	1287 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	INPP4B	O15327	924 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	TP73	O15350	636 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	DFNA5	O60443	496 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SLC25A14	O95258	325 aa	Predicted RBP	13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SLU7	O95391	586 aa	Known RBP	13.06	□□□□□ -0.32
SF1-206	ENST00000413725	CER1	O95813	267 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	RHOXF2B	P0C7M4	288 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	MC4R	P32245	332 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	CTSK	P43235	329 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ACVR1	Q04771	509 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	CACNG1	Q06432	222 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	NFATC2	Q13469	925 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	PEX6	Q13608	980 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	KIF19	Q2TAC6	998 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	GPR33	Q49SQ1	333 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ATP13A5	Q4VNC0	1218 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	AFTPH	Q6ULP2	937 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ENPP7	Q6UWV6	458 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	CENPU	Q71F23	418 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ASCL5	Q7RTU5	278 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SNX20	Q7Z614	316 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	PARG	Q86W56	976 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	CCNJL	Q8IV13	435 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SLC22A18AS	Q8N1D0	253 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	MPP5	Q8N3R9	675 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	LRRN4CL	Q8ND94	238 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	OR13J1	Q8NGT2	312 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	OR6P1	Q8NGX9	317 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	GDAP1	Q8TB36	358 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	FBXO25	Q8TCJ0	367 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ZNF398	Q8TD17	642 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	BTN2A2	Q8WVV5	523 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	HDAC10	Q969S8	669 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ZNF669	Q96BR6	464 aa	Predicted RBP	13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ULK4	Q96C45	1275 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SIGLEC10	Q96LC7	697 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	TBATA	Q96M53	351 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ZNF778	Q96MU6	729 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	RHOXF2	Q9BQY4	288 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	FOXP3	Q9BZS1	431 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ASB8	Q9H765	288 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	ERVMER34-1	Q9H9K5	563 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	TREX1	Q9NSU2	369 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SMOX	Q9NWM0	555 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	KL	Q9UEF7	1012 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	MTRF1L	Q9UGC7	380 aa	Known RBP	13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SLC2A6	Q9UGQ3	507 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	CRLS1	Q9UJA2	301 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	SNX11	Q9Y5W9	270 aa		13.06	□□□□□ -0.32
SF1-206	ENST00000413725	LNP1	A1A4G5	178 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	CCDC162P	A2VCL2	907 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	GAPDHS	O14556	408 aa	Predicted RBP	13.05	□□□□□ -0.32
SF1-206	ENST00000413725	EIF3H	O15372	352 aa	Known RBP eCLIP	13.05	□□□□□ -0.32
SF1-206	ENST00000413725	GFRA3	O60609	400 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	USP1	O94782	785 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	ASMTL	O95671	621 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	TTC4	O95801	387 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	POLB	P06746	335 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	ENG	P17813	658 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	PGAM1	P18669	254 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	NMBR	P28336	390 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	ARRB1	P49407	418 aa	Predicted RBP	13.05	□□□□□ -0.32
SF1-206	ENST00000413725	ARSD	P51689	593 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	XIAP	P98170	497 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	PDIA2	Q13087	525 aa	Known RBP	13.05	□□□□□ -0.32
SF1-206	ENST00000413725	CUL1	Q13616	776 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	FZD2	Q14332	565 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	HLTF	Q14527	1009 aa	Known RBP eCLIP	13.05	□□□□□ -0.32
SF1-206	ENST00000413725	SF3A2	Q15428	464 aa	Known RBP	13.05	□□□□□ -0.32
SF1-206	ENST00000413725	MSS51	Q4VC12	460 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	ZRANB3	Q5FWF4	1079 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	LDLRAP1	Q5SW96	308 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	TCEAL6	Q6IPX3	200 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	PRR23C	Q6ZRP0	262 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	CEP128	Q6ZU80	1094 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	SPATS2	Q86XZ4	545 aa	Known RBP	13.05	□□□□□ -0.32
SF1-206	ENST00000413725	IFT20	Q8IY31	132 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	DCLK2	Q8N568	766 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	OR56A4	Q8NGH8	313 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	IFT81	Q8WYA0	676 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	TCEAL3	Q969E4	200 aa		13.05	□□□□□ -0.32
SF1-206	ENST00000413725	FAM122A	Q96E09	287 aa		13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms