RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 OR14C36Q8NHC7 312 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 FAM131CQ96AQ9 280 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 IL22Q9GZX6 179 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 C12orf65Q9H3J6 166 aaKnown RBP13.39□□□□□ -0.27
LIMS1-204ENST00000409441 KLC4Q9NSK0 619 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 PCMTD2Q9NV79 361 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 SIRPGQ9P1W8 387 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 TXNDC16Q9P2K2 825 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 FBXO4Q9UKT5 387 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 CYP8B1Q9UNU6 501 aa13.39□□□□□ -0.27
LIMS1-204ENST00000409441 CACNA1IQ9P0X4 2223 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 CCDC163A0A0D9SF12 145 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 NEMP1O14524 444 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 AREL1O15033 823 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 SLC7A4O43246 635 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 FGF1P05230 155 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 PIRTP0C851 137 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 NQO1P15559 274 aaKnown RBP13.38□□□□□ -0.27
LIMS1-204ENST00000409441 TPH1P17752 444 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 BGNP21810 368 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 OXTRP30559 389 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 ACSL1P33121 698 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 FNTBP49356 437 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 MAP7D1Q3KQU3 841 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 USP39Q53GS9 565 aaKnown RBP13.38□□□□□ -0.27
LIMS1-204ENST00000409441 ERAP2Q6P179 960 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 NLRP9Q7RTR0 991 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 CCDC91Q7Z6B0 441 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 FRMD1Q8N878 549 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 ISL2Q96A47 359 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 ZNF669Q96BR6 464 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-204ENST00000409441 C7orf26Q96N11 449 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 BTBD1Q9H0C5 482 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 MYLK2Q9H1R3 596 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 NPHS2Q9NP85 383 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 PIH1D1Q9NWS0 290 aaKnown RBP13.38□□□□□ -0.27
LIMS1-204ENST00000409441 DCDC2Q9UHG0 476 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 GGT7Q9UJ14 662 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 SOX13Q9UN79 622 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 INVSQ9Y283 1065 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 MTO1Q9Y2Z2 717 aaKnown RBP13.38□□□□□ -0.27
LIMS1-204ENST00000409441 FADS3Q9Y5Q0 445 aa13.38□□□□□ -0.27
LIMS1-204ENST00000409441 PLRG1O43660 514 aaKnown RBP13.37□□□□□ -0.27
LIMS1-204ENST00000409441 HNRNPCL1O60812 293 aaKnown RBP13.37□□□□□ -0.27
LIMS1-204ENST00000409441 UNC5CO95185 931 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 ITGA2BP08514 1039 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 NFKBIAP25963 317 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 SPRP35270 261 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-204ENST00000409441 ELP6Q0PNE2 266 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 ANKRD20A4Q4UJ75 823 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 CYB5D1Q6P9G0 228 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 USP45Q70EL2 814 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 NUDCD3Q8IVD9 361 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 FAM160A2Q8N612 972 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-204ENST00000409441 ARMC2Q8NEN0 867 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 TOE1Q96GM8 510 aaKnown RBP13.37□□□□□ -0.27
LIMS1-204ENST00000409441 MCCC1Q96RQ3 725 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-204ENST00000409441 SLC13A1Q9BZW2 595 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 SGK2Q9HBY8 427 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 MAGEE1Q9HCI5 957 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 NSMCE4AQ9NXX6 385 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 B4GALT6Q9UBX8 382 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 ITM2BQ9Y287 266 aa13.37□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3DA0A087WVF3 549 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3IA0A087WXS9 549 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3EA0A087X179 549 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3KA0A087X1G2 549 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 A0A0U1RQS6 177 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3FA6NER0 549 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-204ENST00000409441 CAPN8A6NHC0 703 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 NPIPB15A6NHN6 443 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3LB9A6J9 549 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 DLL1O00548 723 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 SPINT1O43278 529 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TSPAN6O43657 245 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 AP1G1O43747 822 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 PCDH8O95206 1070 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 BPGMP07738 259 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3HP0C7X1 549 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 CYP2A6P11509 494 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-204ENST00000409441 CD6P30203 668 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 MAGEA12P43365 314 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 ADPRHP54922 357 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 CSE1LP55060 971 aaKnown RBP13.36□□□□□ -0.27
LIMS1-204ENST00000409441 ELF3P78545 371 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-204ENST00000409441 MSLNQ13421 630 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-204ENST00000409441 ANGPT1Q15389 498 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3GQ6DHY5 549 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3CQ6IPX1 549 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 CRTC1Q6UUV9 634 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 DPPA4Q7L190 304 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 ASRGL1Q7L266 308 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 WDR5BQ86VZ2 330 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 LONP2Q86WA8 852 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 UNC5BQ8IZJ1 945 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 TBC1D3Q8IZP1 549 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-204ENST00000409441 BLOC1S5Q8TDH9 187 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 KLHL29Q96CT2 875 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 ERP27Q96DN0 273 aa13.36□□□□□ -0.27
LIMS1-204ENST00000409441 FCRL3Q96P31 734 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms