RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ZNF334Q9HCZ1 680 aaPredicted RBP9.05□□□□□ -0.96
LIG4-202ENST00000405925 MIEF1Q9NQG6 463 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 COPG2Q9UBF2 871 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 B4GALT6Q9UBX8 382 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 KCNE2Q9Y6J6 123 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 EDDM13A0A1B0GTR0 161 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 HDAC3O15379 428 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 PLIN3O60664 434 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 NIPSNAP2O75323 286 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 TM7SF2O76062 418 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 MLYCDO95822 493 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 COL6A2P12110 1019 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 PSMC3P17980 439 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 IL10P22301 178 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 NSG1P42857 185 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 CDC16Q13042 620 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 FASTKQ14296 549 aaKnown RBP9.05□□□□□ -0.96
LIG4-202ENST00000405925 CHRNA6Q15825 494 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.05□□□□□ -0.96
LIG4-202ENST00000405925 TMEM220Q6QAJ8 160 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 PRR23CQ6ZRP0 262 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 TPRG1Q6ZUI0 275 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 HOMEZQ8IX15 550 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 APCDD1Q8J025 514 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 ZBTB2Q8N680 514 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 CLDN19Q8N6F1 224 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 RDH11Q8TC12 318 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 SPPL3Q8TCT6 385 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 HAUS8Q9BT25 410 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 SPACA6W5XKT8 324 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 C2orf71A6NGG8 1288 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 UPK3BL1B0FP48 263 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 ISM1B1AKI9 464 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 UPK3BL2E5RIL1 263 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 BIRC5O15392 142 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 ULK1O75385 1050 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 TULP3O75386 442 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 CBX6O95503 412 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 KRT16P08779 473 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 CEBPBP17676 345 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 ITPKAP23677 461 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 CD70P32970 193 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 HNF4AP41235 474 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 SATB1Q01826 763 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 TSNQ15631 228 aaKnown RBP9.05□□□□□ -0.96
LIG4-202ENST00000405925 INO80DQ53TQ3 878 aaPredicted RBP9.05□□□□□ -0.96
LIG4-202ENST00000405925 TEDDM1Q5T9Z0 273 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 LRRC66Q68CR7 880 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 KLHDC10Q6PID8 442 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 GPRIN3Q6ZVF9 776 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 INPP5DQ92835 1189 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 IMP4Q96G21 291 aaKnown RBP9.05□□□□□ -0.96
LIG4-202ENST00000405925 RIOK2Q9BVS4 552 aaKnown RBP9.05□□□□□ -0.96
LIG4-202ENST00000405925 OSBPL1AQ9BXW6 950 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 ATG10Q9H0Y0 220 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 ZNF358Q9NW07 568 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 OSER1Q9NX31 292 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 FBXL12Q9NXK8 326 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 AHSPQ9NZD4 102 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 NOP53Q9NZM5 478 aaKnown RBP9.05□□□□□ -0.96
LIG4-202ENST00000405925 RAP2CQ9Y3L5 183 aa9.05□□□□□ -0.96
LIG4-202ENST00000405925 TPST1O60507 370 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 B4GALT3O60512 393 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 FKBP9O95302 570 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CPSF4O95639 269 aaKnown RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 LATS1O95835 1130 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 EPOP01588 193 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CALB2P22676 271 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 IL4RP24394 825 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 EPHA3P29320 983 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 IRS1P35568 1242 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 DGKEP52429 567 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 ACTN3Q08043 901 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 INPP5AQ14642 412 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 PAGE2BQ5JRK9 111 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 ZNF783Q6ZMS7 281 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 FKBP9P1Q75LS8 142 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CHST15Q7LFX5 561 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 SNX20Q7Z614 316 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 FSTL5Q8N475 847 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 C2orf73Q8N5S3 287 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 SIDT2Q8NBJ9 832 aaKnown RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 AHCYL2Q96HN2 611 aaKnown RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 MARK4Q96L34 752 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 ZBP1Q9H171 429 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 TRIM45Q9H8W5 580 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 MTMR10Q9NXD2 777 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 KCNK4Q9NYG8 393 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 TAGLN3Q9UI15 199 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 DLEC1Q9Y238 1755 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 ANKDD1BA6NHY2 528 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 ZNF839A8K0R7 811 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 IPO13O94829 963 aaKnown RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 KAT7O95251 611 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 RUNX3Q13761 415 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 RSPO2Q6UXX9 243 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 Q6ZVL8 140 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 SNX32Q86XE0 403 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 GALNT13Q8IUC8 556 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CNTD1Q8N815 330 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms