RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SERPINA13PQ6UXR4 307 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 TAS2R42Q7RTR8 314 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 SNX20Q7Z614 316 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 TMIEQ8NEW7 156 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 PPP4R1Q8TF05 950 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 AGAP11Q8TF27 550 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 NXPE3Q969Y0 559 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 MECRQ9BV79 373 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 CDH19Q9H159 772 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 NMRAL1Q9HBL8 299 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 GTSE1Q9NYZ3 720 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 EMCNQ9ULC0 261 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 PRRC2BQ5JSZ5 2229 aaKnown RBP18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 ZNF106Q9H2Y7 1883 aaKnown RBP18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 GLYATL1P3A0A0U1RQE8 302 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 UBA6A0AVT1 1052 aaPredicted RBP18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 PHGDHO43175 533 aaKnown RBP18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 SRP72O76094 671 aaKnown RBP18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 KLHL2O95198 593 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 CLDN7O95471 211 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 SLC35E2BP0CK96 405 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 ESRRAP11474 423 aaPredicted RBP18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 ADARP55265 1226 aaKnown RBP18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 CDKN3Q16667 212 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 CRTC1Q6UUV9 634 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 RAVER1Q8IY67 606 aaKnown RBP18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 PHTF2Q8N3S3 785 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 PLEKHG4BQ96PX9 1271 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 TTYH1Q9H313 450 aaPredicted RBP18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 SYTL2Q9HCH5 934 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 GPAMQ9HCL2 828 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 ARL8BQ9NVJ2 186 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 CRYL1Q9Y2S2 319 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 PCDHB1Q9Y5F3 818 aa18.1■□□□□ 0.49
CCDC88C-203ENST00000389856 RGSL1A5PLK6 1076 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 NPIPB15A6NHN6 443 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 ANHXE9PGG2 379 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 PRAMEF1O95521 474 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 FGF3P11487 239 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 CCNG1P51959 295 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 PEX6Q13608 980 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 HTR4Q13639 388 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 ZNF234Q14588 700 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 LRRC66Q68CR7 880 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 UGT3A1Q6NUS8 523 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 LDB1Q86U70 411 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 ZSWIM9Q86XI8 627 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 FAM13CQ8NE31 585 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 PIWIL2Q8TC59 973 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 LPGAT1Q92604 370 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 ULK4Q96C45 1275 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 SCYL1Q96KG9 808 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 SMIM14Q96QK8 99 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 NDNQ99608 321 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 AARSD1Q9BTE6 412 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 DYRK4Q9NR20 520 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 TAS2R13Q9NYV9 303 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 THAP10Q9P2Z0 257 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 NUMBLQ9Y6R0 609 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 COL4A3Q01955 1670 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 LAMA2P24043 3122 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 MUC22E2RYF6 1773 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 TMEM114B3SHH9 223 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 C1QTNF3-AMACRE9PGA6 284 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 H3BMM5 538 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 VPS26AO75436 327 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 ESR1P03372 595 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 SERPINA6P08185 405 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 CPA3P15088 417 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 ZNF7P17097 686 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 CD9P21926 228 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 FDXRP22570 491 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 TNFRSF4P43489 277 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 HK2P52789 917 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 XIAPP98170 497 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 PDAP1Q13442 181 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 ITGA9Q13797 1035 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 SEMA3AQ14563 771 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 RBM20Q5T481 1227 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 RBFAQ8N0V3 343 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 ASB8Q9H765 288 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 TMEM216Q9P0N5 145 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 COPG2Q9UBF2 871 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 B4GALT6Q9UBX8 382 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 CRLS1Q9UJA2 301 aa18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 RUVBL2Q9Y230 463 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 FNDC3AQ9Y2H6 1198 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-203ENST00000389856 SCN8AQ9UQD0 1980 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 CAPN14A8MX76 684 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 GYG2O15488 501 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 RHOBTB1O94844 696 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 F7P08709 466 aaPredicted RBP18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 RBP1P09455 135 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 LTA4HP09960 611 aaKnown RBP18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 ALOX15P16050 662 aaPredicted RBP18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 ITGB7P26010 798 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 SLC1A6P48664 564 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 AQP5P55064 265 aa18.08■□□□□ 0.48
CCDC88C-203ENST00000389856 ELP6Q0PNE2 266 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms