RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SLC9A3R1O14745 358 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-202ENST00000374876 SLC22A2O15244 555 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 PDHA1P08559 390 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 LTA4HP09960 611 aaKnown RBP15.5■□□□□ 0.07
CCDC40-202ENST00000374876 CCDC166P0CW27 439 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 MAPKAPK2P49137 400 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 YBEYP58557 167 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-202ENST00000374876 MSLNQ13421 630 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-202ENST00000374876 ZNF235Q14590 738 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 IHHQ14623 411 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 ITPRIPL2Q3MIP1 535 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 SH2D4BQ5SQS7 431 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 HECTD2Q5U5R9 776 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 ANO7Q6IWH7 933 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 GALNT7Q86SF2 657 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 TMEM25Q86YD3 366 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 FBXW8Q8N3Y1 598 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 JADE3Q92613 823 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 HDAC10Q969S8 669 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 ZNF184Q99676 751 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-202ENST00000374876 SEMA3CQ99985 751 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 MFSD1Q9H3U5 465 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 S100A14Q9HCY8 104 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 PPM1HQ9ULR3 514 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 PIAS3Q9Y6X2 628 aa15.5■□□□□ 0.07
CCDC40-202ENST00000374876 CUL9Q8IWT3 2517 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 LOC285095A0A1B0GVY8 99 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 FAM86C2PA6NEL3 165 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 TRPC5OSA6NMA1 111 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 AIM2O14862 343 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 CYP17A1P05093 508 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 RBP1P09455 135 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 ATXN1LP0C7T5 689 aaKnown RBP15.49■□□□□ 0.07
CCDC40-202ENST00000374876 ACVRL1P37023 503 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 MTA1Q13330 715 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 DHCR24Q15392 516 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 MLF2Q15773 248 aaPredicted RBP15.49■□□□□ 0.07
CCDC40-202ENST00000374876 TECRLQ5HYJ1 363 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 LY6G5CQ5SRR4 150 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 NAIF1Q69YI7 327 aaPredicted RBP15.49■□□□□ 0.07
CCDC40-202ENST00000374876 TPRG1Q6ZUI0 275 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 SETD3Q86TU7 594 aaPredicted RBP15.49■□□□□ 0.07
CCDC40-202ENST00000374876 SNX32Q86XE0 403 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 CPSF7Q8N684 471 aaKnown RBP15.49■□□□□ 0.07
CCDC40-202ENST00000374876 RP9Q8TA86 221 aaKnown RBP15.49■□□□□ 0.07
CCDC40-202ENST00000374876 SLC26A7Q8TE54 656 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 BHMTQ93088 406 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 TADA1Q96BN2 335 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 CATSPER2Q96P56 530 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 VWA7Q9Y334 891 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 DOCK4Q8N1I0 1966 aa15.49■□□□□ 0.07
CCDC40-202ENST00000374876 MIA3Q5JRA6 1907 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 NEMP2A6NFY4 417 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 TMEM221A6NGB7 291 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 SHISA7A6NL88 538 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 EIF4E1BA6NMX2 242 aaKnown RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 M0R296 226 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 STK25O00506 426 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 CCL22O00626 93 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 PRAMEF11O60813 436 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 SORBS2O94875 1100 aaKnown RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 JUNP05412 331 aaKnown RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 TACR2P21452 398 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 NUDT2P50583 147 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 ARSDP51689 593 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 KLC1Q07866 573 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 NSUN2Q08J23 767 aaKnown RBP eCLIP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 CYLC2Q14093 348 aaPredicted RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 TCHHL1Q5QJ38 904 aaPredicted RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 NADSYN1Q6IA69 706 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 TXNDC11Q6PKC3 985 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 LDB1Q86U70 411 aaPredicted RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 HPS6Q86YV9 775 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 KDM1BQ8NB78 822 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 MIEF2Q96C03 454 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 CHFRQ96EP1 664 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 EML4Q9HC35 981 aaKnown RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 CYP4F12Q9HCS2 524 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 SPHK2Q9NRA0 654 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 POMPQ9Y244 141 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 TMEM233B4DJY2 109 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 F5H5T6 163 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 LDB2O43679 373 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 IPO13O94829 963 aaKnown RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 NFATC1O95644 943 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 HNRNPLP14866 589 aaKnown RBP eCLIP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 ADSLP30566 484 aaPredicted RBP15.48■□□□□ 0.07
CCDC40-202ENST00000374876 GJA4P35212 333 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 MTTPP55157 894 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 LAMB3Q13751 1172 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 CCNIQ14094 377 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 ACAP2Q15057 778 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 SLC14A2Q15849 920 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 TMEM198Q66K66 360 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 C16orf89Q6UX73 402 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 LGI2Q8N0V4 545 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 CPA6Q8N4T0 437 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 AFAP1L2Q8N4X5 818 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 KIAA1958Q8N8K9 716 aa15.48■□□□□ 0.07
CCDC40-202ENST00000374876 PNPLA1Q8N8W4 532 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms