RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TCF12Q99081 682 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 PNPLA3Q9NST1 481 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 OR6C75A6NL08 312 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 HTRA2O43464 458 aaPredicted RBP16.34■□□□□ 0.21
HOXD3-201ENST00000249440 CKMT2P17540 419 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 IL10P22301 178 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 FMO4P31512 558 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 ARPP19P56211 112 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 PRKCQQ04759 706 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 PRKCZQ05513 592 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 FOXM1Q08050 763 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 SPATS1Q496A3 300 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 TBCELQ5QJ74 424 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 TRIML2Q8N7C3 387 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 TSPEARQ8WU66 669 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 LRRC58Q96CX6 371 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 MGME1Q9BQP7 344 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 MAGEH1Q9H213 219 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 SEMA4BQ9NPR2 832 aaPredicted RBP16.34■□□□□ 0.21
HOXD3-201ENST00000249440 SEPT3Q9UH03 358 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 AURKCQ9UQB9 309 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 MYRFQ9Y2G1 1151 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 SLC27A5Q9Y2P5 690 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 A0A0D9SEW6 157 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 DHRS12A0PJE2 317 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 PSMA4P25789 261 aaKnown RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 FAM171A1Q5VUB5 890 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 IL31Q6EBC2 164 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 BLOC1S3Q6QNY0 202 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 AFTPHQ6ULP2 937 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 LGI2Q8N0V4 545 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 CFAP52Q8N1V2 620 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 CD99L2Q8TCZ2 262 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 RMDN1Q96DB5 314 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 CCT7Q99832 543 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 ANKRD60Q9BZ19 345 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 ACTR3BQ9P1U1 418 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 BTRCQ9Y297 605 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 TLR5O60602 858 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 NDUFS3O75489 264 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 PYGLP06737 847 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 PRSS56P0CW18 603 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 ZNF23P17027 643 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 SLC6A2P23975 617 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 ZNF140P52738 457 aaPredicted RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 GRIK2Q13002 908 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 MRPL58Q14197 206 aaKnown RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 NHSL2Q5HYW2 709 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 CCSAPQ6IQ19 270 aaPredicted RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 LCN8Q6JVE9 175 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 OGFOD2Q6N063 350 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 GLT6D1Q7Z4J2 308 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 SPATA19Q7Z5L4 167 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 CAMK1DQ8IU85 385 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 SPPL2CQ8IUH8 684 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 NKAPQ8N5F7 415 aaKnown RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 PACRGLQ8N7B6 248 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 PCSK9Q8NBP7 692 aaKnown RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 SPATA17Q96L03 361 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 PSKH2Q96QS6 385 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 SEPT5Q99719 369 aaPredicted RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 CINPQ9BW66 212 aaPredicted RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 CCSER2Q9H7U1 834 aa16.33■□□□□ 0.2
HOXD3-201ENST00000249440 GMPR2Q9P2T1 348 aaKnown RBP16.33■□□□□ 0.2
HOXD3-201ENST00000249440 C2orf81A6NN90 581 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 FXYD1O00168 92 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 FCGRTP55899 365 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 GNA12Q03113 381 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 TAF1AQ15573 450 aaPredicted RBP16.32■□□□□ 0.2
HOXD3-201ENST00000249440 TSNQ15631 228 aaKnown RBP16.32■□□□□ 0.2
HOXD3-201ENST00000249440 C5orf22Q49AR2 442 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 TMEM259Q4ZIN3 620 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 INTS11Q5TA45 600 aaKnown RBP16.32■□□□□ 0.2
HOXD3-201ENST00000249440 EFL1Q7Z2Z2 1120 aaKnown RBP16.32■□□□□ 0.2
HOXD3-201ENST00000249440 OR4K2Q8NGD2 314 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 RMND5BQ96G75 393 aaPredicted RBP16.32■□□□□ 0.2
HOXD3-201ENST00000249440 TRIM54Q9BYV2 358 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 CAAP1Q9H8G2 361 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 COMMD8Q9NX08 183 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 EGFL7Q9UHF1 273 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 VPS9D1Q9Y2B5 631 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 MED16Q9Y2X0 877 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 ARIH1Q9Y4X5 557 aaPredicted RBP16.32■□□□□ 0.2
HOXD3-201ENST00000249440 GPR45Q9Y5Y3 372 aa16.32■□□□□ 0.2
HOXD3-201ENST00000249440 A0A1W2PP18 115 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 H3BNH8 94 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 SOCS2O14508 198 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 STX16O14662 325 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 ECI2O75521 394 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 CHEK2O96017 543 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 CYBBP04839 570 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 RPS17P08708 135 aaKnown RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 HOXD9P28356 352 aaPredicted RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 FLT3LGP49771 235 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 KCNK10P57789 538 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 FAM189BP81408 668 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 CAPRIN1Q14444 709 aaKnown RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 PABPC1LQ4VXU2 614 aaKnown RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 SETMARQ53H47 684 aaPredicted RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 TXNDC11Q6PKC3 985 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms