RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ARSEP51690 589 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 LIMK2P53671 638 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 MAPK10P53779 464 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 MAZP56270 477 aaKnown RBP11.85□□□□□ -0.51
UPF3B-204ENST00000619445 RAB15P59190 212 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 PTSQ03393 145 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 TRIM14Q14142 442 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 AMZ1Q400G9 498 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 PYCR3Q53H96 274 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 NCBP2-AS2Q69YL0 99 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 NYAP1Q6ZVC0 841 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 TSPAN33Q86UF1 283 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 USP7Q93009 1102 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 FAF2Q96CS3 445 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 COX14Q96I36 57 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 BTBD6Q96KE9 485 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 TEFMQ96QE5 360 aaKnown RBP11.85□□□□□ -0.51
UPF3B-204ENST00000619445 SRPK1Q96SB4 655 aaKnown RBP11.85□□□□□ -0.51
UPF3B-204ENST00000619445 ARHGAP9Q9BRR9 750 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 EPB41L1Q9H4G0 881 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 PCDH9Q9HC56 1237 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 RAD18Q9NS91 495 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 WDR70Q9NW82 654 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 ZNHIT6Q9NWK9 470 aaKnown RBP11.85□□□□□ -0.51
UPF3B-204ENST00000619445 KCNK4Q9NYG8 393 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 PKD2L2Q9NZM6 624 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 TTLL3Q9Y4R7 772 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 MYO18BQ8IUG5 2567 aa11.85□□□□□ -0.51
UPF3B-204ENST00000619445 PRAMEF33A0A0G2JMD5 474 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 OR5K4A6NMS3 321 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 GPR89AB7ZAQ6 455 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 CASC3O15234 703 aaKnown RBP11.84□□□□□ -0.51
UPF3B-204ENST00000619445 CAPN5O15484 640 aaPredicted RBP11.84□□□□□ -0.51
UPF3B-204ENST00000619445 EFSO43281 561 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 DUX1O43812 170 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 PRAMEF10O60809 474 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 SOD1P00441 154 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 FUCA1P04066 466 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 PDHA1P08559 390 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 TPM1P09493 284 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 GPR89BP0CG08 455 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 ITIH1P19827 911 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 AK4P27144 223 aaPredicted RBP11.84□□□□□ -0.51
UPF3B-204ENST00000619445 CD1CP29017 333 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 OR1D5P58170 312 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 MMRN1Q13201 1228 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 SLC18A3Q16572 532 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 ZFYVE27Q5T4F4 411 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 DOK6Q6PKX4 331 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 LUZP1Q86V48 1076 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 DTX1Q86Y01 620 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 CCDC13Q8IYE1 715 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 NAGSQ8N159 534 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 CCNYQ8ND76 341 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 OR10G6Q8NH81 332 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 CPLX3Q8WVH0 158 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 AHCYL2Q96HN2 611 aaKnown RBP11.84□□□□□ -0.51
UPF3B-204ENST00000619445 SLC38A3Q99624 504 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 HERPUD2Q9BSE4 406 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 DDA1Q9BW61 102 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.84□□□□□ -0.51
UPF3B-204ENST00000619445 ZMYND15Q9H091 742 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 BRD8Q9H0E9 1235 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 SEMA6CQ9H3T2 930 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 DEF6Q9H4E7 631 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 SUDS3Q9H7L9 328 aaPredicted RBP11.84□□□□□ -0.51
UPF3B-204ENST00000619445 RDH14Q9HBH5 336 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 CHKBQ9Y259 395 aa11.84□□□□□ -0.51
UPF3B-204ENST00000619445 IGHV1OR21-1A0A087WYE8 117 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 IGHV5-10-1A0A0J9YXX1 117 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 C1orf232A0A0U1RR37 186 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 SSU72P8A0A1W2PR75 194 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 SYCE3A1L190 88 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 B4E171 279 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 ANKRD66B4E2M5 251 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 C9orf172C9J069 976 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 ASMTLO95671 621 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 GYPCP04921 128 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 CD48P09326 243 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 ZFXP17010 805 aaPredicted RBP11.83□□□□□ -0.52
UPF3B-204ENST00000619445 TSPAN7P41732 249 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 ARHGAP25P42331 645 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 POLD2P49005 469 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 DSC2Q02487 901 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 LY6DQ14210 128 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 C16orf72Q14CZ0 275 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 SLC14A2Q15849 920 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 KIAA1614Q5VZ46 1190 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 PDPK2PQ6A1A2 396 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 TMEM71Q6P5X7 295 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 WDR74Q6RFH5 385 aaPredicted RBP11.83□□□□□ -0.52
UPF3B-204ENST00000619445 SFRP1Q8N474 314 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.83□□□□□ -0.52
UPF3B-204ENST00000619445 SCAMP4Q969E2 229 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 CCDC74BQ96LY2 380 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 NUDT22Q9BRQ3 303 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 ZPBPQ9BS86 351 aa11.83□□□□□ -0.52
UPF3B-204ENST00000619445 MLPHQ9BV36 600 aaPredicted RBP11.83□□□□□ -0.52
UPF3B-204ENST00000619445 RIOK2Q9BVS4 552 aaKnown RBP11.83□□□□□ -0.52
UPF3B-204ENST00000619445 XPO4Q9C0E2 1151 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms